miRNA display CGI


Results 1 - 20 of 103 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11182 5' -45.4 NC_002816.1 + 54910 1.14 0.013956
Target:  5'- uCUUUUAACACCAACGCCAACAACGGCu -3'
miRNA:   3'- -GAAAAUUGUGGUUGCGGUUGUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 109376 0.82 0.671819
Target:  5'- -----cACugUAGCGUCAGCGACGGCg -3'
miRNA:   3'- gaaaauUGugGUUGCGGUUGUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 48865 0.82 0.671819
Target:  5'- aCUg--AACACCAugauCGCCGGCAugGGUg -3'
miRNA:   3'- -GAaaaUUGUGGUu---GCGGUUGUugCCG- -5'
11182 5' -45.4 NC_002816.1 + 111290 0.78 0.854075
Target:  5'- --cUUAucauCACCAAuCGCCAGC-ACGGCa -3'
miRNA:   3'- gaaAAUu---GUGGUU-GCGGUUGuUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 31775 0.78 0.870643
Target:  5'- ----cAACGgCAACaCCAGCGACGGCa -3'
miRNA:   3'- gaaaaUUGUgGUUGcGGUUGUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 9014 0.77 0.893569
Target:  5'- ----aAACaACCAAUGCCGACAcuguuaauACGGCu -3'
miRNA:   3'- gaaaaUUG-UGGUUGCGGUUGU--------UGCCG- -5'
11182 5' -45.4 NC_002816.1 + 112870 0.76 0.931983
Target:  5'- ------cCACCAACGCCGACGACa-- -3'
miRNA:   3'- gaaaauuGUGGUUGCGGUUGUUGccg -5'
11182 5' -45.4 NC_002816.1 + 83538 0.76 0.931983
Target:  5'- gUUUUGACACgGGCGCCAguguguGCGAagggGGCa -3'
miRNA:   3'- gAAAAUUGUGgUUGCGGU------UGUUg---CCG- -5'
11182 5' -45.4 NC_002816.1 + 58128 0.75 0.937393
Target:  5'- ---aUGugACCAAUGauCCGAUAACGGCu -3'
miRNA:   3'- gaaaAUugUGGUUGC--GGUUGUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 3824 0.75 0.94252
Target:  5'- ----cAACACCAugGCCAAauccuugauCAACaGGCg -3'
miRNA:   3'- gaaaaUUGUGGUugCGGUU---------GUUG-CCG- -5'
11182 5' -45.4 NC_002816.1 + 37838 0.75 0.94252
Target:  5'- --gUUGACACaggaccaAGCGCCcaccGACAAUGGCa -3'
miRNA:   3'- gaaAAUUGUGg------UUGCGG----UUGUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 27293 0.75 0.946894
Target:  5'- ----cGACACCAgauauggACGCCGGCAGCGa- -3'
miRNA:   3'- gaaaaUUGUGGU-------UGCGGUUGUUGCcg -5'
11182 5' -45.4 NC_002816.1 + 66903 0.75 0.956228
Target:  5'- uUUUUGGCGCCAACuuuGCCAGCAcacuuuuuuuGCcgGGCg -3'
miRNA:   3'- gAAAAUUGUGGUUG---CGGUUGU----------UG--CCG- -5'
11182 5' -45.4 NC_002816.1 + 48655 0.74 0.967522
Target:  5'- ---aUAAUACCAGCGCCuACAAUGa- -3'
miRNA:   3'- gaaaAUUGUGGUUGCGGuUGUUGCcg -5'
11182 5' -45.4 NC_002816.1 + 100402 0.74 0.970779
Target:  5'- ----aAACACCAGCGC-GACAuCGGUg -3'
miRNA:   3'- gaaaaUUGUGGUUGCGgUUGUuGCCG- -5'
11182 5' -45.4 NC_002816.1 + 115086 0.73 0.976578
Target:  5'- -aUUUAACggugACCGAUGCCGACAACa-- -3'
miRNA:   3'- gaAAAUUG----UGGUUGCGGUUGUUGccg -5'
11182 5' -45.4 NC_002816.1 + 50206 0.73 0.981485
Target:  5'- ---aUGugGCCAACGaCGACGAccCGGCg -3'
miRNA:   3'- gaaaAUugUGGUUGCgGUUGUU--GCCG- -5'
11182 5' -45.4 NC_002816.1 + 14719 0.73 0.983628
Target:  5'- -----cACACCAACGUgAAC-ACGGUg -3'
miRNA:   3'- gaaaauUGUGGUUGCGgUUGuUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 98548 0.72 0.98894
Target:  5'- aUUUUGcCACCGGCGCCGAgGACu-- -3'
miRNA:   3'- gAAAAUuGUGGUUGCGGUUgUUGccg -5'
11182 5' -45.4 NC_002816.1 + 111415 0.72 0.990374
Target:  5'- -----cACGCCAACuCCAGCAuACGGUu -3'
miRNA:   3'- gaaaauUGUGGUUGcGGUUGU-UGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.