miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11182 5' -45.4 NC_002816.1 + 66768 0.69 0.999246
Target:  5'- --gUUGGCGCCAaaaACGCgCAGCuuaaaacgaaugcugAACGGUa -3'
miRNA:   3'- gaaAAUUGUGGU---UGCG-GUUG---------------UUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 38648 0.7 0.998147
Target:  5'- ---cUAAC-UgAACGCCAACAaaaacuguACGGCg -3'
miRNA:   3'- gaaaAUUGuGgUUGCGGUUGU--------UGCCG- -5'
11182 5' -45.4 NC_002816.1 + 111859 0.7 0.998147
Target:  5'- ----gAGCACguccacgguguaCAAUGCCAGCAACaGCa -3'
miRNA:   3'- gaaaaUUGUG------------GUUGCGGUUGUUGcCG- -5'
11182 5' -45.4 NC_002816.1 + 63067 0.7 0.998147
Target:  5'- -------uGCCGACGCCGAUuguaGGCg -3'
miRNA:   3'- gaaaauugUGGUUGCGGUUGuug-CCG- -5'
11182 5' -45.4 NC_002816.1 + 86161 0.69 0.998412
Target:  5'- ----cGACACCGaauugauagaguauuACGCCAaucuggagaagaaguACGGCGGUg -3'
miRNA:   3'- gaaaaUUGUGGU---------------UGCGGU---------------UGUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 116492 0.69 0.99875
Target:  5'- ---aUGACAUCAACGacaCCAACAGaGGUg -3'
miRNA:   3'- gaaaAUUGUGGUUGC---GGUUGUUgCCG- -5'
11182 5' -45.4 NC_002816.1 + 30354 0.69 0.99875
Target:  5'- ----gGACugCGACGCCGuCAACGu- -3'
miRNA:   3'- gaaaaUUGugGUUGCGGUuGUUGCcg -5'
11182 5' -45.4 NC_002816.1 + 121001 0.69 0.998983
Target:  5'- ------cCACCAucgguAUGCaCAGCAugGGCa -3'
miRNA:   3'- gaaaauuGUGGU-----UGCG-GUUGUugCCG- -5'
11182 5' -45.4 NC_002816.1 + 102927 0.69 0.999178
Target:  5'- --aUUuGCACgGuuGCGCCAGCAuCGGUu -3'
miRNA:   3'- gaaAAuUGUGgU--UGCGGUUGUuGCCG- -5'
11182 5' -45.4 NC_002816.1 + 48712 0.7 0.997315
Target:  5'- ----cAACACCcAUGCCGGCGaucAUGGUg -3'
miRNA:   3'- gaaaaUUGUGGuUGCGGUUGU---UGCCG- -5'
11182 5' -45.4 NC_002816.1 + 35879 0.7 0.997315
Target:  5'- --cUUAAaaaguGCGCCAGCGugGGCa -3'
miRNA:   3'- gaaAAUUgugguUGCGGUUGUugCCG- -5'
11182 5' -45.4 NC_002816.1 + 101313 0.71 0.995504
Target:  5'- -------uGCCGaguucgguucauACGCCGACAugGGCc -3'
miRNA:   3'- gaaaauugUGGU------------UGCGGUUGUugCCG- -5'
11182 5' -45.4 NC_002816.1 + 9014 0.77 0.893569
Target:  5'- ----aAACaACCAAUGCCGACAcuguuaauACGGCu -3'
miRNA:   3'- gaaaaUUG-UGGUUGCGGUUGU--------UGCCG- -5'
11182 5' -45.4 NC_002816.1 + 112870 0.76 0.931983
Target:  5'- ------cCACCAACGCCGACGACa-- -3'
miRNA:   3'- gaaaauuGUGGUUGCGGUUGUUGccg -5'
11182 5' -45.4 NC_002816.1 + 3824 0.75 0.94252
Target:  5'- ----cAACACCAugGCCAAauccuugauCAACaGGCg -3'
miRNA:   3'- gaaaaUUGUGGUugCGGUU---------GUUG-CCG- -5'
11182 5' -45.4 NC_002816.1 + 27293 0.75 0.946894
Target:  5'- ----cGACACCAgauauggACGCCGGCAGCGa- -3'
miRNA:   3'- gaaaaUUGUGGU-------UGCGGUUGUUGCcg -5'
11182 5' -45.4 NC_002816.1 + 98548 0.72 0.98894
Target:  5'- aUUUUGcCACCGGCGCCGAgGACu-- -3'
miRNA:   3'- gAAAAUuGUGGUUGCGGUUgUUGccg -5'
11182 5' -45.4 NC_002816.1 + 49217 0.71 0.992803
Target:  5'- --gUUGACACCGugGUUAugAA-GGCg -3'
miRNA:   3'- gaaAAUUGUGGUugCGGUugUUgCCG- -5'
11182 5' -45.4 NC_002816.1 + 87024 0.71 0.993818
Target:  5'- ----cAAUGCCAcCGCCAACAAUaGCa -3'
miRNA:   3'- gaaaaUUGUGGUuGCGGUUGUUGcCG- -5'
11182 5' -45.4 NC_002816.1 + 1888 0.71 0.994716
Target:  5'- -gUUUGACAUCAACGagGACAACGa- -3'
miRNA:   3'- gaAAAUUGUGGUUGCggUUGUUGCcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.