Results 1 - 20 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11182 | 5' | -45.4 | NC_002816.1 | + | 30400 | 0.66 | 0.999981 |
Target: 5'- ---cUAACACCAccAUGCCcACAAUGa- -3' miRNA: 3'- gaaaAUUGUGGU--UGCGGuUGUUGCcg -5' |
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11182 | 5' | -45.4 | NC_002816.1 | + | 36460 | 0.67 | 0.999883 |
Target: 5'- ----cAACACCcuggauGAUGUCAuauGCGACGGUg -3' miRNA: 3'- gaaaaUUGUGG------UUGCGGU---UGUUGCCG- -5' |
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11182 | 5' | -45.4 | NC_002816.1 | + | 38233 | 0.67 | 0.999883 |
Target: 5'- ----cAGCACCAAU-UCGACGugGGUg -3' miRNA: 3'- gaaaaUUGUGGUUGcGGUUGUugCCG- -5' |
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11182 | 5' | -45.4 | NC_002816.1 | + | 54910 | 1.14 | 0.013956 |
Target: 5'- uCUUUUAACACCAACGCCAACAACGGCu -3' miRNA: 3'- -GAAAAUUGUGGUUGCGGUUGUUGCCG- -5' |
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11182 | 5' | -45.4 | NC_002816.1 | + | 117263 | 0.66 | 0.999974 |
Target: 5'- gCUUUgacgGACaaACCAugGCCGACAuUGuGUa -3' miRNA: 3'- -GAAAa---UUG--UGGUugCGGUUGUuGC-CG- -5' |
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11182 | 5' | -45.4 | NC_002816.1 | + | 45883 | 0.66 | 0.999974 |
Target: 5'- ----gGACACUGua-CCGGCGACGGUg -3' miRNA: 3'- gaaaaUUGUGGUugcGGUUGUUGCCG- -5' |
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11182 | 5' | -45.4 | NC_002816.1 | + | 67244 | 0.66 | 0.999964 |
Target: 5'- ---gUggUGCUggUGcCCAGCAACGGa -3' miRNA: 3'- gaaaAuuGUGGuuGC-GGUUGUUGCCg -5' |
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11182 | 5' | -45.4 | NC_002816.1 | + | 79094 | 0.66 | 0.999964 |
Target: 5'- --gUUGGcCACCAccuUGCaCAACAuggACGGCg -3' miRNA: 3'- gaaAAUU-GUGGUu--GCG-GUUGU---UGCCG- -5' |
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11182 | 5' | -45.4 | NC_002816.1 | + | 19031 | 0.66 | 0.999951 |
Target: 5'- --aUUGAUuugGCCAauaGCGCCAAgucuaaGAUGGCa -3' miRNA: 3'- gaaAAUUG---UGGU---UGCGGUUg-----UUGCCG- -5' |
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11182 | 5' | -45.4 | NC_002816.1 | + | 10369 | 0.67 | 0.999912 |
Target: 5'- ----gGGCuCgGGCGCCAACAacACGcGCa -3' miRNA: 3'- gaaaaUUGuGgUUGCGGUUGU--UGC-CG- -5' |
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11182 | 5' | -45.4 | NC_002816.1 | + | 21495 | 0.66 | 0.999934 |
Target: 5'- ------uCACCGAUGCCAuACAGCGu- -3' miRNA: 3'- gaaaauuGUGGUUGCGGU-UGUUGCcg -5' |
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11182 | 5' | -45.4 | NC_002816.1 | + | 117891 | 0.66 | 0.999951 |
Target: 5'- ----aGGCAgCAAUGgUAAUAAUGGCa -3' miRNA: 3'- gaaaaUUGUgGUUGCgGUUGUUGCCG- -5' |
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11182 | 5' | -45.4 | NC_002816.1 | + | 39606 | 0.66 | 0.999981 |
Target: 5'- -------uGCCAGCGCac-CGugGGCa -3' miRNA: 3'- gaaaauugUGGUUGCGguuGUugCCG- -5' |
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11182 | 5' | -45.4 | NC_002816.1 | + | 73538 | 0.66 | 0.999934 |
Target: 5'- -gUUgcACACCAACGCCuuaAACGu- -3' miRNA: 3'- gaAAauUGUGGUUGCGGuugUUGCcg -5' |
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11182 | 5' | -45.4 | NC_002816.1 | + | 117534 | 0.66 | 0.999981 |
Target: 5'- --aUUGGCGCacauGC-CCGGCGACGaGCg -3' miRNA: 3'- gaaAAUUGUGgu--UGcGGUUGUUGC-CG- -5' |
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11182 | 5' | -45.4 | NC_002816.1 | + | 97820 | 0.66 | 0.999963 |
Target: 5'- -aUUUGAUggacaaaACCAACuCCGACuAACGGUu -3' miRNA: 3'- gaAAAUUG-------UGGUUGcGGUUG-UUGCCG- -5' |
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11182 | 5' | -45.4 | NC_002816.1 | + | 109885 | 0.66 | 0.999934 |
Target: 5'- --aUUuGCGCCAAUGCCAAauacCGGa -3' miRNA: 3'- gaaAAuUGUGGUUGCGGUUguu-GCCg -5' |
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11182 | 5' | -45.4 | NC_002816.1 | + | 103632 | 0.67 | 0.999883 |
Target: 5'- ----aAACACauACGUCAACAaaACGGUg -3' miRNA: 3'- gaaaaUUGUGguUGCGGUUGU--UGCCG- -5' |
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11182 | 5' | -45.4 | NC_002816.1 | + | 93127 | 0.66 | 0.999981 |
Target: 5'- ----cGACACCAuacuCGacuACAACGGUg -3' miRNA: 3'- gaaaaUUGUGGUu---GCgguUGUUGCCG- -5' |
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11182 | 5' | -45.4 | NC_002816.1 | + | 32379 | 0.66 | 0.999964 |
Target: 5'- ----cGGCGgUGAUGUCGcGCAACGGCa -3' miRNA: 3'- gaaaaUUGUgGUUGCGGU-UGUUGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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