miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11182 5' -45.4 NC_002816.1 + 1888 0.71 0.994716
Target:  5'- -gUUUGACAUCAACGagGACAACGa- -3'
miRNA:   3'- gaAAAUUGUGGUUGCggUUGUUGCcg -5'
11182 5' -45.4 NC_002816.1 + 3707 0.68 0.999671
Target:  5'- ----gAACACCAcauCGCCG-CGAgGGUg -3'
miRNA:   3'- gaaaaUUGUGGUu--GCGGUuGUUgCCG- -5'
11182 5' -45.4 NC_002816.1 + 3824 0.75 0.94252
Target:  5'- ----cAACACCAugGCCAAauccuugauCAACaGGCg -3'
miRNA:   3'- gaaaaUUGUGGUugCGGUU---------GUUG-CCG- -5'
11182 5' -45.4 NC_002816.1 + 5356 0.67 0.999847
Target:  5'- --aUUggUGCguGCGUCAACAcauuCGGCa -3'
miRNA:   3'- gaaAAuuGUGguUGCGGUUGUu---GCCG- -5'
11182 5' -45.4 NC_002816.1 + 6858 0.71 0.995504
Target:  5'- --gUUGACG--AGCGCCAuCAGCGGUg -3'
miRNA:   3'- gaaAAUUGUggUUGCGGUuGUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 7335 0.68 0.999663
Target:  5'- -----cACACCGuucucggGCGCCcGCugauACGGCa -3'
miRNA:   3'- gaaaauUGUGGU-------UGCGGuUGu---UGCCG- -5'
11182 5' -45.4 NC_002816.1 + 8459 0.68 0.999647
Target:  5'- ---gUGACGCCGuguuugucGCGCCAauccaacgucuccgGCAACaGCg -3'
miRNA:   3'- gaaaAUUGUGGU--------UGCGGU--------------UGUUGcCG- -5'
11182 5' -45.4 NC_002816.1 + 9014 0.77 0.893569
Target:  5'- ----aAACaACCAAUGCCGACAcuguuaauACGGCu -3'
miRNA:   3'- gaaaaUUG-UGGUUGCGGUUGU--------UGCCG- -5'
11182 5' -45.4 NC_002816.1 + 9721 0.66 0.999964
Target:  5'- ----cAGCACCcGCGCCAcauaaAUAuuuUGGCa -3'
miRNA:   3'- gaaaaUUGUGGuUGCGGU-----UGUu--GCCG- -5'
11182 5' -45.4 NC_002816.1 + 10093 0.69 0.998983
Target:  5'- --gUUGGCGagaCAGCGCCAcuguuACAAUGGa -3'
miRNA:   3'- gaaAAUUGUg--GUUGCGGU-----UGUUGCCg -5'
11182 5' -45.4 NC_002816.1 + 10369 0.67 0.999912
Target:  5'- ----gGGCuCgGGCGCCAACAacACGcGCa -3'
miRNA:   3'- gaaaaUUGuGgUUGCGGUUGU--UGC-CG- -5'
11182 5' -45.4 NC_002816.1 + 14136 0.69 0.998474
Target:  5'- ---cUGACACCAACGCCGAUc----- -3'
miRNA:   3'- gaaaAUUGUGGUUGCGGUUGuugccg -5'
11182 5' -45.4 NC_002816.1 + 14325 0.67 0.999847
Target:  5'- ---gUAACguaACCGGCGCCGcGCAAguaauCGGCc -3'
miRNA:   3'- gaaaAUUG---UGGUUGCGGU-UGUU-----GCCG- -5'
11182 5' -45.4 NC_002816.1 + 14719 0.73 0.983628
Target:  5'- -----cACACCAACGUgAAC-ACGGUg -3'
miRNA:   3'- gaaaauUGUGGUUGCGgUUGuUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 17111 0.66 0.999951
Target:  5'- -gUUUGACACUAuUGCCGcguACAuuGCGGa -3'
miRNA:   3'- gaAAAUUGUGGUuGCGGU---UGU--UGCCg -5'
11182 5' -45.4 NC_002816.1 + 17307 0.67 0.999843
Target:  5'- ----gAACugCAACaGCUcauaaacaaugguGGCGGCGGCa -3'
miRNA:   3'- gaaaaUUGugGUUG-CGG-------------UUGUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 19031 0.66 0.999951
Target:  5'- --aUUGAUuugGCCAauaGCGCCAAgucuaaGAUGGCa -3'
miRNA:   3'- gaaAAUUG---UGGU---UGCGGUUg-----UUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 19531 0.66 0.999934
Target:  5'- ----aAACACCGcGCGUCca-GACGGCc -3'
miRNA:   3'- gaaaaUUGUGGU-UGCGGuugUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 21495 0.66 0.999934
Target:  5'- ------uCACCGAUGCCAuACAGCGu- -3'
miRNA:   3'- gaaaauuGUGGUUGCGGU-UGUUGCcg -5'
11182 5' -45.4 NC_002816.1 + 25648 0.67 0.999912
Target:  5'- ----aAACGCCuGC-CCAAUuuGCGGCa -3'
miRNA:   3'- gaaaaUUGUGGuUGcGGUUGu-UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.