miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11182 5' -45.4 NC_002816.1 + 122481 0.68 0.999671
Target:  5'- ----aAACugUAAcCGCCcguACAACGGUg -3'
miRNA:   3'- gaaaaUUGugGUU-GCGGu--UGUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 121986 0.68 0.999671
Target:  5'- ---gUAACGuuGugGCCAGCcuUGGCc -3'
miRNA:   3'- gaaaAUUGUggUugCGGUUGuuGCCG- -5'
11182 5' -45.4 NC_002816.1 + 121770 0.67 0.999801
Target:  5'- aUUUUGACACCAuggGCGCUGuacACAAuccauUGGUg -3'
miRNA:   3'- gAAAAUUGUGGU---UGCGGU---UGUU-----GCCG- -5'
11182 5' -45.4 NC_002816.1 + 121001 0.69 0.998983
Target:  5'- ------cCACCAucgguAUGCaCAGCAugGGCa -3'
miRNA:   3'- gaaaauuGUGGU-----UGCG-GUUGUugCCG- -5'
11182 5' -45.4 NC_002816.1 + 120283 0.66 0.999981
Target:  5'- -gUUUGAgGa-AACGCU-ACAACGGCa -3'
miRNA:   3'- gaAAAUUgUggUUGCGGuUGUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 120042 0.66 0.999981
Target:  5'- -----cGCGCCAGuguaGUCAACAGCGaGUa -3'
miRNA:   3'- gaaaauUGUGGUUg---CGGUUGUUGC-CG- -5'
11182 5' -45.4 NC_002816.1 + 117891 0.66 0.999951
Target:  5'- ----aGGCAgCAAUGgUAAUAAUGGCa -3'
miRNA:   3'- gaaaaUUGUgGUUGCgGUUGUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 117534 0.66 0.999981
Target:  5'- --aUUGGCGCacauGC-CCGGCGACGaGCg -3'
miRNA:   3'- gaaAAUUGUGgu--UGcGGUUGUUGC-CG- -5'
11182 5' -45.4 NC_002816.1 + 117263 0.66 0.999974
Target:  5'- gCUUUgacgGACaaACCAugGCCGACAuUGuGUa -3'
miRNA:   3'- -GAAAa---UUG--UGGUugCGGUUGUuGC-CG- -5'
11182 5' -45.4 NC_002816.1 + 117243 0.68 0.999743
Target:  5'- ------cCACCAGuuUGUaCAACGACGGCa -3'
miRNA:   3'- gaaaauuGUGGUU--GCG-GUUGUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 116492 0.69 0.99875
Target:  5'- ---aUGACAUCAACGacaCCAACAGaGGUg -3'
miRNA:   3'- gaaaAUUGUGGUUGC---GGUUGUUgCCG- -5'
11182 5' -45.4 NC_002816.1 + 115336 0.69 0.998474
Target:  5'- -----uACGCCAAagauuacauUGUgGACAGCGGCa -3'
miRNA:   3'- gaaaauUGUGGUU---------GCGgUUGUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 115086 0.73 0.976578
Target:  5'- -aUUUAACggugACCGAUGCCGACAACa-- -3'
miRNA:   3'- gaAAAUUG----UGGUUGCGGUUGUUGccg -5'
11182 5' -45.4 NC_002816.1 + 112870 0.76 0.931983
Target:  5'- ------cCACCAACGCCGACGACa-- -3'
miRNA:   3'- gaaaauuGUGGUUGCGGUUGUUGccg -5'
11182 5' -45.4 NC_002816.1 + 111859 0.7 0.998147
Target:  5'- ----gAGCACguccacgguguaCAAUGCCAGCAACaGCa -3'
miRNA:   3'- gaaaaUUGUG------------GUUGCGGUUGUUGcCG- -5'
11182 5' -45.4 NC_002816.1 + 111415 0.72 0.990374
Target:  5'- -----cACGCCAACuCCAGCAuACGGUu -3'
miRNA:   3'- gaaaauUGUGGUUGcGGUUGU-UGCCG- -5'
11182 5' -45.4 NC_002816.1 + 111290 0.78 0.854075
Target:  5'- --cUUAucauCACCAAuCGCCAGC-ACGGCa -3'
miRNA:   3'- gaaAAUu---GUGGUU-GCGGUUGuUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 110263 0.71 0.995504
Target:  5'- aCUUUUucGACAaCGACGCCcaaGugGACGGUa -3'
miRNA:   3'- -GAAAA--UUGUgGUUGCGG---UugUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 109885 0.66 0.999934
Target:  5'- --aUUuGCGCCAAUGCCAAauacCGGa -3'
miRNA:   3'- gaaAAuUGUGGUUGCGGUUguu-GCCg -5'
11182 5' -45.4 NC_002816.1 + 109524 0.67 0.999847
Target:  5'- ---gUGACGCCGuCGCUGACgcuacaGugGGCc -3'
miRNA:   3'- gaaaAUUGUGGUuGCGGUUG------UugCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.