miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11182 5' -45.4 NC_002816.1 + 39544 0.66 0.999934
Target:  5'- ----aAACACCGGCaCCuuugacugcACAGCGGUg -3'
miRNA:   3'- gaaaaUUGUGGUUGcGGu--------UGUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 21495 0.66 0.999934
Target:  5'- ------uCACCGAUGCCAuACAGCGu- -3'
miRNA:   3'- gaaaauuGUGGUUGCGGU-UGUUGCcg -5'
11182 5' -45.4 NC_002816.1 + 19531 0.66 0.999934
Target:  5'- ----aAACACCGcGCGUCca-GACGGCc -3'
miRNA:   3'- gaaaaUUGUGGU-UGCGGuugUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 109885 0.66 0.999934
Target:  5'- --aUUuGCGCCAAUGCCAAauacCGGa -3'
miRNA:   3'- gaaAAuUGUGGUUGCGGUUguu-GCCg -5'
11182 5' -45.4 NC_002816.1 + 25648 0.67 0.999912
Target:  5'- ----aAACGCCuGC-CCAAUuuGCGGCa -3'
miRNA:   3'- gaaaaUUGUGGuUGcGGUUGu-UGCCG- -5'
11182 5' -45.4 NC_002816.1 + 10369 0.67 0.999912
Target:  5'- ----gGGCuCgGGCGCCAACAacACGcGCa -3'
miRNA:   3'- gaaaaUUGuGgUUGCGGUUGU--UGC-CG- -5'
11182 5' -45.4 NC_002816.1 + 103632 0.67 0.999883
Target:  5'- ----aAACACauACGUCAACAaaACGGUg -3'
miRNA:   3'- gaaaaUUGUGguUGCGGUUGU--UGCCG- -5'
11182 5' -45.4 NC_002816.1 + 38233 0.67 0.999883
Target:  5'- ----cAGCACCAAU-UCGACGugGGUg -3'
miRNA:   3'- gaaaaUUGUGGUUGcGGUUGUugCCG- -5'
11182 5' -45.4 NC_002816.1 + 36460 0.67 0.999883
Target:  5'- ----cAACACCcuggauGAUGUCAuauGCGACGGUg -3'
miRNA:   3'- gaaaaUUGUGG------UUGCGGU---UGUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 100477 0.67 0.999883
Target:  5'- ----gGugGCCGAgcgaGCCAuCAACGGUc -3'
miRNA:   3'- gaaaaUugUGGUUg---CGGUuGUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 73334 0.67 0.999883
Target:  5'- ----cAGCACCAggauggauucgGCGCgaugCAACuACGGCa -3'
miRNA:   3'- gaaaaUUGUGGU-----------UGCG----GUUGuUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 55408 0.67 0.999863
Target:  5'- aCUUUgugcACACCAuUGUuuugcuggaaauaauCAACGGCGGCa -3'
miRNA:   3'- -GAAAau--UGUGGUuGCG---------------GUUGUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 109524 0.67 0.999847
Target:  5'- ---gUGACGCCGuCGCUGACgcuacaGugGGCc -3'
miRNA:   3'- gaaaAUUGUGGUuGCGGUUG------UugCCG- -5'
11182 5' -45.4 NC_002816.1 + 5356 0.67 0.999847
Target:  5'- --aUUggUGCguGCGUCAACAcauuCGGCa -3'
miRNA:   3'- gaaAAuuGUGguUGCGGUUGUu---GCCG- -5'
11182 5' -45.4 NC_002816.1 + 14325 0.67 0.999847
Target:  5'- ---gUAACguaACCGGCGCCGcGCAAguaauCGGCc -3'
miRNA:   3'- gaaaAUUG---UGGUUGCGGU-UGUU-----GCCG- -5'
11182 5' -45.4 NC_002816.1 + 17307 0.67 0.999843
Target:  5'- ----gAACugCAACaGCUcauaaacaaugguGGCGGCGGCa -3'
miRNA:   3'- gaaaaUUGugGUUG-CGG-------------UUGUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 121770 0.67 0.999801
Target:  5'- aUUUUGACACCAuggGCGCUGuacACAAuccauUGGUg -3'
miRNA:   3'- gAAAAUUGUGGU---UGCGGU---UGUU-----GCCG- -5'
11182 5' -45.4 NC_002816.1 + 117243 0.68 0.999743
Target:  5'- ------cCACCAGuuUGUaCAACGACGGCa -3'
miRNA:   3'- gaaaauuGUGGUU--GCG-GUUGUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 74747 0.68 0.999743
Target:  5'- -----uGCACCAAUaaCCAACAGCaGCa -3'
miRNA:   3'- gaaaauUGUGGUUGc-GGUUGUUGcCG- -5'
11182 5' -45.4 NC_002816.1 + 87525 0.68 0.999743
Target:  5'- -----uACACCAccuUGCuCAACAACGaGCg -3'
miRNA:   3'- gaaaauUGUGGUu--GCG-GUUGUUGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.