miRNA display CGI


Results 41 - 60 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11182 5' -45.4 NC_002816.1 + 26894 0.68 0.999671
Target:  5'- ----cGACAauuCCAACGCCGAC--UGGUa -3'
miRNA:   3'- gaaaaUUGU---GGUUGCGGUUGuuGCCG- -5'
11182 5' -45.4 NC_002816.1 + 65186 0.68 0.999671
Target:  5'- ---aUAACAUCAACaCCAACAACa-- -3'
miRNA:   3'- gaaaAUUGUGGUUGcGGUUGUUGccg -5'
11182 5' -45.4 NC_002816.1 + 91510 0.68 0.999671
Target:  5'- ----aAACACuCAACGaaaCCAAgAACGGUg -3'
miRNA:   3'- gaaaaUUGUG-GUUGC---GGUUgUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 122481 0.68 0.999671
Target:  5'- ----aAACugUAAcCGCCcguACAACGGUg -3'
miRNA:   3'- gaaaaUUGugGUU-GCGGu--UGUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 121986 0.68 0.999671
Target:  5'- ---gUAACGuuGugGCCAGCcuUGGCc -3'
miRNA:   3'- gaaaAUUGUggUugCGGUUGuuGCCG- -5'
11182 5' -45.4 NC_002816.1 + 33285 0.68 0.999671
Target:  5'- --aUUAcCACCAACGCCAccACAAUa-- -3'
miRNA:   3'- gaaAAUuGUGGUUGCGGU--UGUUGccg -5'
11182 5' -45.4 NC_002816.1 + 75953 0.68 0.999671
Target:  5'- ---cUGACACCGcuugcGCGUCgAAUAACuGGCg -3'
miRNA:   3'- gaaaAUUGUGGU-----UGCGG-UUGUUG-CCG- -5'
11182 5' -45.4 NC_002816.1 + 3707 0.68 0.999671
Target:  5'- ----gAACACCAcauCGCCG-CGAgGGUg -3'
miRNA:   3'- gaaaaUUGUGGUu--GCGGUuGUUgCCG- -5'
11182 5' -45.4 NC_002816.1 + 7335 0.68 0.999663
Target:  5'- -----cACACCGuucucggGCGCCcGCugauACGGCa -3'
miRNA:   3'- gaaaauUGUGGU-------UGCGGuUGu---UGCCG- -5'
11182 5' -45.4 NC_002816.1 + 8459 0.68 0.999647
Target:  5'- ---gUGACGCCGuguuugucGCGCCAauccaacgucuccgGCAACaGCg -3'
miRNA:   3'- gaaaAUUGUGGU--------UGCGGU--------------UGUUGcCG- -5'
11182 5' -45.4 NC_002816.1 + 67860 0.68 0.999582
Target:  5'- aCUUgu--CACCaAACGCCuuCGcCGGCu -3'
miRNA:   3'- -GAAaauuGUGG-UUGCGGuuGUuGCCG- -5'
11182 5' -45.4 NC_002816.1 + 66768 0.69 0.999246
Target:  5'- --gUUGGCGCCAaaaACGCgCAGCuuaaaacgaaugcugAACGGUa -3'
miRNA:   3'- gaaAAUUGUGGU---UGCG-GUUG---------------UUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 102927 0.69 0.999178
Target:  5'- --aUUuGCACgGuuGCGCCAGCAuCGGUu -3'
miRNA:   3'- gaaAAuUGUGgU--UGCGGUUGUuGCCG- -5'
11182 5' -45.4 NC_002816.1 + 59421 0.69 0.999178
Target:  5'- ----cGACACCAACaaCCAGCAAUGcGUc -3'
miRNA:   3'- gaaaaUUGUGGUUGc-GGUUGUUGC-CG- -5'
11182 5' -45.4 NC_002816.1 + 33049 0.69 0.999178
Target:  5'- -------gACCAGCaccGCCGACuuCGGCa -3'
miRNA:   3'- gaaaauugUGGUUG---CGGUUGuuGCCG- -5'
11182 5' -45.4 NC_002816.1 + 56699 0.69 0.999178
Target:  5'- ---aUAACGCCuccuccaacuACGCCAcCAgaaauuGCGGCa -3'
miRNA:   3'- gaaaAUUGUGGu---------UGCGGUuGU------UGCCG- -5'
11182 5' -45.4 NC_002816.1 + 10093 0.69 0.998983
Target:  5'- --gUUGGCGagaCAGCGCCAcuguuACAAUGGa -3'
miRNA:   3'- gaaAAUUGUg--GUUGCGGU-----UGUUGCCg -5'
11182 5' -45.4 NC_002816.1 + 121001 0.69 0.998983
Target:  5'- ------cCACCAucgguAUGCaCAGCAugGGCa -3'
miRNA:   3'- gaaaauuGUGGU-----UGCG-GUUGUugCCG- -5'
11182 5' -45.4 NC_002816.1 + 74447 0.69 0.998983
Target:  5'- -----cGCGCUuauaGACGCCAGCAAUaGCa -3'
miRNA:   3'- gaaaauUGUGG----UUGCGGUUGUUGcCG- -5'
11182 5' -45.4 NC_002816.1 + 34760 0.69 0.998962
Target:  5'- ----cGGCGCgGGCGCaCAcacaacuuguugaACGACGGCu -3'
miRNA:   3'- gaaaaUUGUGgUUGCG-GU-------------UGUUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.