miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11185 5' -46.9 NC_002816.1 + 32135 0.66 0.999786
Target:  5'- aUACAUGUUCGaCAGUuuugucAGCAcuuuuGAGUGGUc -3'
miRNA:   3'- -GUGUGCAAGUgGUCA------UUGU-----UUCACCG- -5'
11185 5' -46.9 NC_002816.1 + 121957 0.66 0.999775
Target:  5'- gCACACGgcgcggCAaugggguaaucaCGGUAACGuuGUGGCc -3'
miRNA:   3'- -GUGUGCaa----GUg-----------GUCAUUGUuuCACCG- -5'
11185 5' -46.9 NC_002816.1 + 3219 0.66 0.999725
Target:  5'- aCACAaGUUUaauguGCCAcauacAACAAGGUGGCg -3'
miRNA:   3'- -GUGUgCAAG-----UGGUca---UUGUUUCACCG- -5'
11185 5' -46.9 NC_002816.1 + 1825 0.66 0.999725
Target:  5'- gACAuCGUUCgACUGGUgggcgGugGGAGUGGUg -3'
miRNA:   3'- gUGU-GCAAG-UGGUCA-----UugUUUCACCG- -5'
11185 5' -46.9 NC_002816.1 + 59299 0.66 0.999596
Target:  5'- gGCugGauugUUGCCAGUuugacuugaacgcggAGCGAAGUGuGCg -3'
miRNA:   3'- gUGugCa---AGUGGUCA---------------UUGUUUCAC-CG- -5'
11185 5' -46.9 NC_002816.1 + 46993 0.66 0.999556
Target:  5'- uCACGCGUUUucUCAGcGAgGuuGUGGCg -3'
miRNA:   3'- -GUGUGCAAGu-GGUCaUUgUuuCACCG- -5'
11185 5' -46.9 NC_002816.1 + 11229 0.66 0.999556
Target:  5'- -cCACG-UCAUCAGUGAgAAGGUGu- -3'
miRNA:   3'- guGUGCaAGUGGUCAUUgUUUCACcg -5'
11185 5' -46.9 NC_002816.1 + 80871 0.67 0.999304
Target:  5'- aCACACccaacauuGUUUugUcg-GACAAAGUGGCg -3'
miRNA:   3'- -GUGUG--------CAAGugGucaUUGUUUCACCG- -5'
11185 5' -46.9 NC_002816.1 + 105421 0.67 0.999136
Target:  5'- gCACAgUGUUCACUAGUG---GGGUGcGCu -3'
miRNA:   3'- -GUGU-GCAAGUGGUCAUuguUUCAC-CG- -5'
11185 5' -46.9 NC_002816.1 + 4016 0.67 0.998935
Target:  5'- aGCAUG-UCACCGacuacaugGACAAGGUGaGCa -3'
miRNA:   3'- gUGUGCaAGUGGUca------UUGUUUCAC-CG- -5'
11185 5' -46.9 NC_002816.1 + 41104 0.67 0.998696
Target:  5'- uGCGCGaaUUCaucuACCAGUugGGCAGaacuauAGUGGCg -3'
miRNA:   3'- gUGUGC--AAG----UGGUCA--UUGUU------UCACCG- -5'
11185 5' -46.9 NC_002816.1 + 26767 0.68 0.998413
Target:  5'- aACACG--CGCUAGgcAcCAAGGUGGUa -3'
miRNA:   3'- gUGUGCaaGUGGUCauU-GUUUCACCG- -5'
11185 5' -46.9 NC_002816.1 + 21417 0.68 0.997687
Target:  5'- uCACA-GUagUACCcGUAACAAuuGGUGGCg -3'
miRNA:   3'- -GUGUgCAa-GUGGuCAUUGUU--UCACCG- -5'
11185 5' -46.9 NC_002816.1 + 21231 0.68 0.997232
Target:  5'- --aGgGUUUGCCAGagGugAAGGUGGCu -3'
miRNA:   3'- gugUgCAAGUGGUCa-UugUUUCACCG- -5'
11185 5' -46.9 NC_002816.1 + 21668 0.68 0.997232
Target:  5'- aCACACGUaaCACgCAGUGGCAugcaUGGUg -3'
miRNA:   3'- -GUGUGCAa-GUG-GUCAUUGUuuc-ACCG- -5'
11185 5' -46.9 NC_002816.1 + 74452 0.68 0.996704
Target:  5'- gCGCuGCGUUCACCcc--GCucAGUGGCu -3'
miRNA:   3'- -GUG-UGCAAGUGGucauUGuuUCACCG- -5'
11185 5' -46.9 NC_002816.1 + 761 0.69 0.996096
Target:  5'- --aACGUaCACCAGUGGCGguagAAGUagGGCc -3'
miRNA:   3'- gugUGCAaGUGGUCAUUGU----UUCA--CCG- -5'
11185 5' -46.9 NC_002816.1 + 77412 0.69 0.994604
Target:  5'- aCACACug-CACaauuGGUGACGA-GUGGCg -3'
miRNA:   3'- -GUGUGcaaGUGg---UCAUUGUUuCACCG- -5'
11185 5' -46.9 NC_002816.1 + 85010 0.69 0.993702
Target:  5'- gGCACGguguuagUAUCGGgaaaGACGAGGUGGUg -3'
miRNA:   3'- gUGUGCaa-----GUGGUCa---UUGUUUCACCG- -5'
11185 5' -46.9 NC_002816.1 + 75917 0.7 0.991163
Target:  5'- gACACGUUCcccuuugaguuugaACgGGUA--GAGGUGGCg -3'
miRNA:   3'- gUGUGCAAG--------------UGgUCAUugUUUCACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.