Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11185 | 5' | -46.9 | NC_002816.1 | + | 761 | 0.69 | 0.996096 |
Target: 5'- --aACGUaCACCAGUGGCGguagAAGUagGGCc -3' miRNA: 3'- gugUGCAaGUGGUCAUUGU----UUCA--CCG- -5' |
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11185 | 5' | -46.9 | NC_002816.1 | + | 1825 | 0.66 | 0.999725 |
Target: 5'- gACAuCGUUCgACUGGUgggcgGugGGAGUGGUg -3' miRNA: 3'- gUGU-GCAAG-UGGUCA-----UugUUUCACCG- -5' |
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11185 | 5' | -46.9 | NC_002816.1 | + | 3219 | 0.66 | 0.999725 |
Target: 5'- aCACAaGUUUaauguGCCAcauacAACAAGGUGGCg -3' miRNA: 3'- -GUGUgCAAG-----UGGUca---UUGUUUCACCG- -5' |
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11185 | 5' | -46.9 | NC_002816.1 | + | 4016 | 0.67 | 0.998935 |
Target: 5'- aGCAUG-UCACCGacuacaugGACAAGGUGaGCa -3' miRNA: 3'- gUGUGCaAGUGGUca------UUGUUUCAC-CG- -5' |
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11185 | 5' | -46.9 | NC_002816.1 | + | 11229 | 0.66 | 0.999556 |
Target: 5'- -cCACG-UCAUCAGUGAgAAGGUGu- -3' miRNA: 3'- guGUGCaAGUGGUCAUUgUUUCACcg -5' |
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11185 | 5' | -46.9 | NC_002816.1 | + | 14443 | 0.74 | 0.926842 |
Target: 5'- uGCGCGUUUgcaaACCGu--GCAGGGUGGCg -3' miRNA: 3'- gUGUGCAAG----UGGUcauUGUUUCACCG- -5' |
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11185 | 5' | -46.9 | NC_002816.1 | + | 16858 | 0.71 | 0.978813 |
Target: 5'- gGCACGgacgUGCCcGUAuuuuacaGCGGAGUGGCa -3' miRNA: 3'- gUGUGCaa--GUGGuCAU-------UGUUUCACCG- -5' |
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11185 | 5' | -46.9 | NC_002816.1 | + | 19610 | 0.71 | 0.98352 |
Target: 5'- uGCAC--UCGCCGGUGAU--AGUGGUc -3' miRNA: 3'- gUGUGcaAGUGGUCAUUGuuUCACCG- -5' |
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11185 | 5' | -46.9 | NC_002816.1 | + | 21231 | 0.68 | 0.997232 |
Target: 5'- --aGgGUUUGCCAGagGugAAGGUGGCu -3' miRNA: 3'- gugUgCAAGUGGUCa-UugUUUCACCG- -5' |
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11185 | 5' | -46.9 | NC_002816.1 | + | 21417 | 0.68 | 0.997687 |
Target: 5'- uCACA-GUagUACCcGUAACAAuuGGUGGCg -3' miRNA: 3'- -GUGUgCAa-GUGGuCAUUGUU--UCACCG- -5' |
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11185 | 5' | -46.9 | NC_002816.1 | + | 21668 | 0.68 | 0.997232 |
Target: 5'- aCACACGUaaCACgCAGUGGCAugcaUGGUg -3' miRNA: 3'- -GUGUGCAa-GUG-GUCAUUGUuuc-ACCG- -5' |
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11185 | 5' | -46.9 | NC_002816.1 | + | 26767 | 0.68 | 0.998413 |
Target: 5'- aACACG--CGCUAGgcAcCAAGGUGGUa -3' miRNA: 3'- gUGUGCaaGUGGUCauU-GUUUCACCG- -5' |
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11185 | 5' | -46.9 | NC_002816.1 | + | 32135 | 0.66 | 0.999786 |
Target: 5'- aUACAUGUUCGaCAGUuuugucAGCAcuuuuGAGUGGUc -3' miRNA: 3'- -GUGUGCAAGUgGUCA------UUGU-----UUCACCG- -5' |
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11185 | 5' | -46.9 | NC_002816.1 | + | 41104 | 0.67 | 0.998696 |
Target: 5'- uGCGCGaaUUCaucuACCAGUugGGCAGaacuauAGUGGCg -3' miRNA: 3'- gUGUGC--AAG----UGGUCA--UUGUU------UCACCG- -5' |
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11185 | 5' | -46.9 | NC_002816.1 | + | 46993 | 0.66 | 0.999556 |
Target: 5'- uCACGCGUUUucUCAGcGAgGuuGUGGCg -3' miRNA: 3'- -GUGUGCAAGu-GGUCaUUgUuuCACCG- -5' |
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11185 | 5' | -46.9 | NC_002816.1 | + | 55403 | 0.72 | 0.970769 |
Target: 5'- aACgACGUUCACCAGUuugu-GGUGGa -3' miRNA: 3'- gUG-UGCAAGUGGUCAuuguuUCACCg -5' |
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11185 | 5' | -46.9 | NC_002816.1 | + | 59125 | 0.7 | 0.989835 |
Target: 5'- cCAC-CGUUUACCcgcauauuaaacuuAGUGAUAAAGcGGCg -3' miRNA: 3'- -GUGuGCAAGUGG--------------UCAUUGUUUCaCCG- -5' |
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11185 | 5' | -46.9 | NC_002816.1 | + | 59299 | 0.66 | 0.999596 |
Target: 5'- gGCugGauugUUGCCAGUuugacuugaacgcggAGCGAAGUGuGCg -3' miRNA: 3'- gUGugCa---AGUGGUCA---------------UUGUUUCAC-CG- -5' |
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11185 | 5' | -46.9 | NC_002816.1 | + | 74452 | 0.68 | 0.996704 |
Target: 5'- gCGCuGCGUUCACCcc--GCucAGUGGCu -3' miRNA: 3'- -GUG-UGCAAGUGGucauUGuuUCACCG- -5' |
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11185 | 5' | -46.9 | NC_002816.1 | + | 75917 | 0.7 | 0.991163 |
Target: 5'- gACACGUUCcccuuugaguuugaACgGGUA--GAGGUGGCg -3' miRNA: 3'- gUGUGCAAG--------------UGgUCAUugUUUCACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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