Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11187 | 5' | -49.2 | NC_002816.1 | + | 10555 | 1.12 | 0.006551 |
Target: 5'- uUCCUCCAAAAAAUACGACCCACCCACa -3' miRNA: 3'- -AGGAGGUUUUUUAUGCUGGGUGGGUG- -5' |
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11187 | 5' | -49.2 | NC_002816.1 | + | 29836 | 0.77 | 0.648372 |
Target: 5'- uUCC-CCGGAGAAcUGCGACUCuCCCACa -3' miRNA: 3'- -AGGaGGUUUUUU-AUGCUGGGuGGGUG- -5' |
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11187 | 5' | -49.2 | NC_002816.1 | + | 520 | 0.74 | 0.804156 |
Target: 5'- cUCUCCAAAAAGggcuuUGCGuuCCCGCUCACu -3' miRNA: 3'- aGGAGGUUUUUU-----AUGCu-GGGUGGGUG- -5' |
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11187 | 5' | -49.2 | NC_002816.1 | + | 107961 | 0.72 | 0.888422 |
Target: 5'- uUCgUCCAGGAuuauguAGUugGGCaCACCCACa -3' miRNA: 3'- -AGgAGGUUUU------UUAugCUGgGUGGGUG- -5' |
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11187 | 5' | -49.2 | NC_002816.1 | + | 12579 | 0.72 | 0.888422 |
Target: 5'- aUUCUCCAAAcAcgACGACgCCACCaUACa -3' miRNA: 3'- -AGGAGGUUUuUuaUGCUG-GGUGG-GUG- -5' |
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11187 | 5' | -49.2 | NC_002816.1 | + | 46310 | 0.72 | 0.881041 |
Target: 5'- cCCaCCAAAAAcccGCGACCCuucACCCACc -3' miRNA: 3'- aGGaGGUUUUUua-UGCUGGG---UGGGUG- -5' |
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11187 | 5' | -49.2 | NC_002816.1 | + | 98610 | 0.71 | 0.937959 |
Target: 5'- uUCCUCCu--AAAUAaca-CCACCCACu -3' miRNA: 3'- -AGGAGGuuuUUUAUgcugGGUGGGUG- -5' |
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11187 | 5' | -49.2 | NC_002816.1 | + | 72510 | 0.71 | 0.921402 |
Target: 5'- cUCCUCCAuc--AUACu-CUCACCCACc -3' miRNA: 3'- -AGGAGGUuuuuUAUGcuGGGUGGGUG- -5' |
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11187 | 5' | -49.2 | NC_002816.1 | + | 59797 | 0.7 | 0.956279 |
Target: 5'- gCCUUU-----GUugGACCCGCCCAa -3' miRNA: 3'- aGGAGGuuuuuUAugCUGGGUGGGUg -5' |
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11187 | 5' | -49.2 | NC_002816.1 | + | 83865 | 0.7 | 0.956279 |
Target: 5'- -gCUCCA-----UACcACCCACCCACc -3' miRNA: 3'- agGAGGUuuuuuAUGcUGGGUGGGUG- -5' |
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11187 | 5' | -49.2 | NC_002816.1 | + | 64913 | 0.7 | 0.960209 |
Target: 5'- cCCaCCAAuuucucgACGcGCCCGCCCGCg -3' miRNA: 3'- aGGaGGUUuuuua--UGC-UGGGUGGGUG- -5' |
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11187 | 5' | -49.2 | NC_002816.1 | + | 7313 | 0.7 | 0.952094 |
Target: 5'- -aCUCCAcAAAGUACGcCgCCACCaCACc -3' miRNA: 3'- agGAGGUuUUUUAUGCuG-GGUGG-GUG- -5' |
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11187 | 5' | -49.2 | NC_002816.1 | + | 56486 | 0.7 | 0.960209 |
Target: 5'- cUCCUCCcuGAGcacacACGcCCCACCCGg -3' miRNA: 3'- -AGGAGGuuUUUua---UGCuGGGUGGGUg -5' |
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11187 | 5' | -49.2 | NC_002816.1 | + | 97988 | 0.69 | 0.963887 |
Target: 5'- gCCUCCcuGGAGAAgcgugACGACUugaUACCCGCc -3' miRNA: 3'- aGGAGG--UUUUUUa----UGCUGG---GUGGGUG- -5' |
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11187 | 5' | -49.2 | NC_002816.1 | + | 76565 | 0.69 | 0.963887 |
Target: 5'- cCCUCCAAucacAAAU-CGACUCACCgCAa -3' miRNA: 3'- aGGAGGUUu---UUUAuGCUGGGUGG-GUg -5' |
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11187 | 5' | -49.2 | NC_002816.1 | + | 105941 | 0.69 | 0.976227 |
Target: 5'- cUgUUCAAGAuGUGCGAUCaCACCUACa -3' miRNA: 3'- aGgAGGUUUUuUAUGCUGG-GUGGGUG- -5' |
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11187 | 5' | -49.2 | NC_002816.1 | + | 18192 | 0.69 | 0.963887 |
Target: 5'- gCCUCUucg----GC-ACCCACCCACa -3' miRNA: 3'- aGGAGGuuuuuuaUGcUGGGUGGGUG- -5' |
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11187 | 5' | -49.2 | NC_002816.1 | + | 98125 | 0.69 | 0.963887 |
Target: 5'- cUUCUCCAGGGAG-GCGGCCa--CCACa -3' miRNA: 3'- -AGGAGGUUUUUUaUGCUGGgugGGUG- -5' |
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11187 | 5' | -49.2 | NC_002816.1 | + | 44579 | 0.69 | 0.971731 |
Target: 5'- gCCUgCAAAAAAU-CGACCCcgacaugaaauccucACCCAa -3' miRNA: 3'- aGGAgGUUUUUUAuGCUGGG---------------UGGGUg -5' |
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11187 | 5' | -49.2 | NC_002816.1 | + | 79026 | 0.68 | 0.981956 |
Target: 5'- uUCCUCCGcaaccugaucacccaAuuGGUGCGACCCAaaguccugaCCAUc -3' miRNA: 3'- -AGGAGGU---------------UuuUUAUGCUGGGUg--------GGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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