Results 1 - 20 of 20 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11190 | 3' | -58.4 | NC_002816.1 | + | 23471 | 1.05 | 0.002286 |
Target: 5'- aUUACGCCGACCCACAUCCACACCCCGc -3' miRNA: 3'- -AAUGCGGCUGGGUGUAGGUGUGGGGC- -5' |
|||||||
11190 | 3' | -58.4 | NC_002816.1 | + | 77310 | 0.71 | 0.460059 |
Target: 5'- -aGCGuCCG--CCACAUCCACACCCa- -3' miRNA: 3'- aaUGC-GGCugGGUGUAGGUGUGGGgc -5' |
|||||||
11190 | 3' | -58.4 | NC_002816.1 | + | 23430 | 0.7 | 0.507538 |
Target: 5'- aUGCGCCGAUCUACGUCaucauUACgCCGa -3' miRNA: 3'- aAUGCGGCUGGGUGUAGgu---GUGgGGC- -5' |
|||||||
11190 | 3' | -58.4 | NC_002816.1 | + | 29356 | 0.69 | 0.56704 |
Target: 5'- uUUACGCgUGGC-CACGUCCACAUCCa- -3' miRNA: 3'- -AAUGCG-GCUGgGUGUAGGUGUGGGgc -5' |
|||||||
11190 | 3' | -58.4 | NC_002816.1 | + | 112875 | 0.69 | 0.577151 |
Target: 5'- -aACGCCGACgaCAC--CCuCACCCCGa -3' miRNA: 3'- aaUGCGGCUGg-GUGuaGGuGUGGGGC- -5' |
|||||||
11190 | 3' | -58.4 | NC_002816.1 | + | 91710 | 0.69 | 0.587302 |
Target: 5'- --cCGCCGcaguCCCACAUCUcCACCCa- -3' miRNA: 3'- aauGCGGCu---GGGUGUAGGuGUGGGgc -5' |
|||||||
11190 | 3' | -58.4 | NC_002816.1 | + | 31031 | 0.69 | 0.597486 |
Target: 5'- ---aGCCGACagagaaACAUCCAC-CCCCa -3' miRNA: 3'- aaugCGGCUGgg----UGUAGGUGuGGGGc -5' |
|||||||
11190 | 3' | -58.4 | NC_002816.1 | + | 109340 | 0.68 | 0.617922 |
Target: 5'- --uCGCCGACUUACcuuUCUACGCCCa- -3' miRNA: 3'- aauGCGGCUGGGUGu--AGGUGUGGGgc -5' |
|||||||
11190 | 3' | -58.4 | NC_002816.1 | + | 10930 | 0.68 | 0.62816 |
Target: 5'- aUGCGCUG-CCCACA--CAgGCCCUGg -3' miRNA: 3'- aAUGCGGCuGGGUGUagGUgUGGGGC- -5' |
|||||||
11190 | 3' | -58.4 | NC_002816.1 | + | 107841 | 0.68 | 0.648637 |
Target: 5'- gUACGCC--CCCACAUacacaaucuugCCGCGCuCCCGc -3' miRNA: 3'- aAUGCGGcuGGGUGUA-----------GGUGUG-GGGC- -5' |
|||||||
11190 | 3' | -58.4 | NC_002816.1 | + | 17800 | 0.68 | 0.648637 |
Target: 5'- -cGCGCCaGuguCCCACGUgUcaGCGCCCCa -3' miRNA: 3'- aaUGCGG-Cu--GGGUGUAgG--UGUGGGGc -5' |
|||||||
11190 | 3' | -58.4 | NC_002816.1 | + | 105734 | 0.68 | 0.65886 |
Target: 5'- -cACgGUCGACCCcCGUCCcguCACCCaCGa -3' miRNA: 3'- aaUG-CGGCUGGGuGUAGGu--GUGGG-GC- -5' |
|||||||
11190 | 3' | -58.4 | NC_002816.1 | + | 17652 | 0.68 | 0.65886 |
Target: 5'- -gGCGCUGACacgugggaCACuggCgCGCACCCCGu -3' miRNA: 3'- aaUGCGGCUGg-------GUGua-G-GUGUGGGGC- -5' |
|||||||
11190 | 3' | -58.4 | NC_002816.1 | + | 16053 | 0.68 | 0.638401 |
Target: 5'- -gGCGCCGAaCCACGccaCCACAUCCa- -3' miRNA: 3'- aaUGCGGCUgGGUGUa--GGUGUGGGgc -5' |
|||||||
11190 | 3' | -58.4 | NC_002816.1 | + | 110731 | 0.67 | 0.719442 |
Target: 5'- -gACGCCGucGCCCACcUCCuaaGCUCUGu -3' miRNA: 3'- aaUGCGGC--UGGGUGuAGGug-UGGGGC- -5' |
|||||||
11190 | 3' | -58.4 | NC_002816.1 | + | 6353 | 0.67 | 0.666004 |
Target: 5'- -gACGCCGcCCCAaucucccuguagucCA-CCACACCCUc -3' miRNA: 3'- aaUGCGGCuGGGU--------------GUaGGUGUGGGGc -5' |
|||||||
11190 | 3' | -58.4 | NC_002816.1 | + | 40092 | 0.66 | 0.767947 |
Target: 5'- --cCGCUGAUCCaACGcUCCACACUUCa -3' miRNA: 3'- aauGCGGCUGGG-UGU-AGGUGUGGGGc -5' |
|||||||
11190 | 3' | -58.4 | NC_002816.1 | + | 32907 | 0.66 | 0.758452 |
Target: 5'- cUGC-CCGACCCACcgCCucaucaacagGCACCgUGg -3' miRNA: 3'- aAUGcGGCUGGGUGuaGG----------UGUGGgGC- -5' |
|||||||
11190 | 3' | -58.4 | NC_002816.1 | + | 15894 | 0.66 | 0.748844 |
Target: 5'- uUUGCGCCcuACCUaucaACAUaCGCACCCCu -3' miRNA: 3'- -AAUGCGGc-UGGG----UGUAgGUGUGGGGc -5' |
|||||||
11190 | 3' | -58.4 | NC_002816.1 | + | 12232 | 0.66 | 0.72933 |
Target: 5'- aUUACGUgcGCCCAUAUCaaaaACACCCUc -3' miRNA: 3'- -AAUGCGgcUGGGUGUAGg---UGUGGGGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home