Results 61 - 80 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11197 | 5' | -53.3 | NC_002816.1 | + | 30207 | 0.69 | 0.835925 |
Target: 5'- aCGUcUCACCACCGAC---CCCACUg- -3' miRNA: 3'- -GCGuAGUGGUGGUUGuuuGGGUGGgu -5' |
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11197 | 5' | -53.3 | NC_002816.1 | + | 12637 | 0.69 | 0.835925 |
Target: 5'- aGCAcaAUCGCCAuuuguucgaucGCGAGCCCGCCUc -3' miRNA: 3'- gCGUagUGGUGGU-----------UGUUUGGGUGGGu -5' |
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11197 | 5' | -53.3 | NC_002816.1 | + | 36923 | 0.69 | 0.827278 |
Target: 5'- uCGuCGUCAUCACCc---AAUCCACCCAu -3' miRNA: 3'- -GC-GUAGUGGUGGuuguUUGGGUGGGU- -5' |
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11197 | 5' | -53.3 | NC_002816.1 | + | 32064 | 0.69 | 0.827278 |
Target: 5'- uGCccagCACCACC-ACA--UCCACCCAg -3' miRNA: 3'- gCGua--GUGGUGGuUGUuuGGGUGGGU- -5' |
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11197 | 5' | -53.3 | NC_002816.1 | + | 67232 | 0.7 | 0.809421 |
Target: 5'- aCGCAgCACCACCAACGuugUCCGCaUCAc -3' miRNA: 3'- -GCGUaGUGGUGGUUGUuu-GGGUG-GGU- -5' |
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11197 | 5' | -53.3 | NC_002816.1 | + | 82333 | 0.7 | 0.800229 |
Target: 5'- aGUgagCACCACCGACAAAUUCAUCUc -3' miRNA: 3'- gCGua-GUGGUGGUUGUUUGGGUGGGu -5' |
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11197 | 5' | -53.3 | NC_002816.1 | + | 109375 | 0.7 | 0.800229 |
Target: 5'- cCGCAUUACCACCAaaaacucugagACGGGCCgcuuCGCCg- -3' miRNA: 3'- -GCGUAGUGGUGGU-----------UGUUUGG----GUGGgu -5' |
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11197 | 5' | -53.3 | NC_002816.1 | + | 7468 | 0.7 | 0.800229 |
Target: 5'- uCGCAcaaccUCACCGCCAcACuacuCCUACCCc -3' miRNA: 3'- -GCGU-----AGUGGUGGU-UGuuu-GGGUGGGu -5' |
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11197 | 5' | -53.3 | NC_002816.1 | + | 112057 | 0.7 | 0.790874 |
Target: 5'- gCGCAUCuCCucauCCAACAcguCCCACgCCGg -3' miRNA: 3'- -GCGUAGuGGu---GGUUGUuu-GGGUG-GGU- -5' |
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11197 | 5' | -53.3 | NC_002816.1 | + | 84450 | 0.7 | 0.790874 |
Target: 5'- uGCgAUCGCC-CCAACGucGAUCUACCCc -3' miRNA: 3'- gCG-UAGUGGuGGUUGU--UUGGGUGGGu -5' |
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11197 | 5' | -53.3 | NC_002816.1 | + | 41948 | 0.7 | 0.781365 |
Target: 5'- cCGCA--ACCuCCAGCAAACCC-CUCAa -3' miRNA: 3'- -GCGUagUGGuGGUUGUUUGGGuGGGU- -5' |
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11197 | 5' | -53.3 | NC_002816.1 | + | 76540 | 0.7 | 0.781365 |
Target: 5'- uGCcuUCGCCACgGAuCAucGCCCACCCu -3' miRNA: 3'- gCGu-AGUGGUGgUU-GUu-UGGGUGGGu -5' |
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11197 | 5' | -53.3 | NC_002816.1 | + | 37797 | 0.7 | 0.771713 |
Target: 5'- uGCAU-GCC-CCAACAc-CCCACCCGc -3' miRNA: 3'- gCGUAgUGGuGGUUGUuuGGGUGGGU- -5' |
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11197 | 5' | -53.3 | NC_002816.1 | + | 34921 | 0.71 | 0.752017 |
Target: 5'- aCGUuaaacgCGCCACCAACccAUCCACCUg -3' miRNA: 3'- -GCGua----GUGGUGGUUGuuUGGGUGGGu -5' |
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11197 | 5' | -53.3 | NC_002816.1 | + | 112860 | 0.71 | 0.752017 |
Target: 5'- uGCGgagaCACCACCAACGccGACgaCACCCu -3' miRNA: 3'- gCGUa---GUGGUGGUUGU--UUGg-GUGGGu -5' |
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11197 | 5' | -53.3 | NC_002816.1 | + | 8797 | 0.71 | 0.752017 |
Target: 5'- cCGU-UCACCACCAACA-GCUCGCgCAg -3' miRNA: 3'- -GCGuAGUGGUGGUUGUuUGGGUGgGU- -5' |
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11197 | 5' | -53.3 | NC_002816.1 | + | 17378 | 0.71 | 0.741994 |
Target: 5'- aGCAcUCGCCACaCAAguGACCgACCUAc -3' miRNA: 3'- gCGU-AGUGGUG-GUUguUUGGgUGGGU- -5' |
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11197 | 5' | -53.3 | NC_002816.1 | + | 121040 | 0.71 | 0.721649 |
Target: 5'- cCGCcUCAuCUAUCGACugcAACCCACCCu -3' miRNA: 3'- -GCGuAGU-GGUGGUUGu--UUGGGUGGGu -5' |
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11197 | 5' | -53.3 | NC_002816.1 | + | 110778 | 0.71 | 0.718566 |
Target: 5'- uGCAUCGCaugagccgccuccuCACCAACAAccauCCCACCa- -3' miRNA: 3'- gCGUAGUG--------------GUGGUUGUUu---GGGUGGgu -5' |
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11197 | 5' | -53.3 | NC_002816.1 | + | 71580 | 0.72 | 0.700974 |
Target: 5'- gGCGUCAUucucuccaCACCAACAcucacGCCCACCUu -3' miRNA: 3'- gCGUAGUG--------GUGGUUGUu----UGGGUGGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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