miRNA display CGI


Results 41 - 60 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11197 5' -53.3 NC_002816.1 + 30554 0.68 0.896656
Target:  5'- uGCAUCACCA-------ACCCACCCc -3'
miRNA:   3'- gCGUAGUGGUgguuguuUGGGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 54903 0.68 0.890471
Target:  5'- ----aCACCaacGCCAACAAcgGCUCGCCCAc -3'
miRNA:   3'- gcguaGUGG---UGGUUGUU--UGGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 110401 0.68 0.890471
Target:  5'- aCGUGUCGCUGCaCAACAccaCCGCCUAc -3'
miRNA:   3'- -GCGUAGUGGUG-GUUGUuugGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 17460 0.68 0.890471
Target:  5'- gGUGaucUCACCACCAACAucGACacucaguuggCCGCCCu -3'
miRNA:   3'- gCGU---AGUGGUGGUUGU--UUG----------GGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 37657 0.68 0.890471
Target:  5'- uGUGUCACCACCGGCAGAUaguaagugCCAUUg- -3'
miRNA:   3'- gCGUAGUGGUGGUUGUUUG--------GGUGGgu -5'
11197 5' -53.3 NC_002816.1 + 121406 0.68 0.890471
Target:  5'- -cCAUCACaggguguacguuCACCAACAguAGCaCCACCCGu -3'
miRNA:   3'- gcGUAGUG------------GUGGUUGU--UUG-GGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 19566 0.68 0.889771
Target:  5'- uCGCGaCACCACCAucgcuguGCGGuUCCACCaCAa -3'
miRNA:   3'- -GCGUaGUGGUGGU-------UGUUuGGGUGG-GU- -5'
11197 5' -53.3 NC_002816.1 + 23142 0.68 0.883367
Target:  5'- gCGCuggaCcCCGCCGACAuuCCC-CCCAu -3'
miRNA:   3'- -GCGua--GuGGUGGUUGUuuGGGuGGGU- -5'
11197 5' -53.3 NC_002816.1 + 46285 0.68 0.883367
Target:  5'- aCGCGgaccggugC-CCAUCAACAuGCCCACCa- -3'
miRNA:   3'- -GCGUa-------GuGGUGGUUGUuUGGGUGGgu -5'
11197 5' -53.3 NC_002816.1 + 72257 0.68 0.883367
Target:  5'- uGUAcagCGCCAUCGACAAGgauCUCACCCu -3'
miRNA:   3'- gCGUa--GUGGUGGUUGUUU---GGGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 107794 0.68 0.878989
Target:  5'- -uCAgCGCCACCAACAGcgcacuuuugcccguACCCGCCg- -3'
miRNA:   3'- gcGUaGUGGUGGUUGUU---------------UGGGUGGgu -5'
11197 5' -53.3 NC_002816.1 + 86885 0.68 0.876023
Target:  5'- gGCGUUcuauguCCACCAACAGACaCC-UCCAa -3'
miRNA:   3'- gCGUAGu-----GGUGGUUGUUUG-GGuGGGU- -5'
11197 5' -53.3 NC_002816.1 + 24900 0.68 0.876023
Target:  5'- uGUGUCAaccagugaaacCCACUu-CGAACCCGCCCu -3'
miRNA:   3'- gCGUAGU-----------GGUGGuuGUUUGGGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 31337 0.68 0.876023
Target:  5'- uGC-UCACCGCCAACcugucaCCAUCCu -3'
miRNA:   3'- gCGuAGUGGUGGUUGuuug--GGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 84099 0.68 0.868446
Target:  5'- uCGUuaCACaCACCAaugaGCGGACCCACCa- -3'
miRNA:   3'- -GCGuaGUG-GUGGU----UGUUUGGGUGGgu -5'
11197 5' -53.3 NC_002816.1 + 85136 0.69 0.860641
Target:  5'- uGCccCACCACCGuaaucaACAcACCCACCa- -3'
miRNA:   3'- gCGuaGUGGUGGU------UGUuUGGGUGGgu -5'
11197 5' -53.3 NC_002816.1 + 18199 0.69 0.852614
Target:  5'- gCGCAggGCCucuUCGGC--ACCCACCCAc -3'
miRNA:   3'- -GCGUagUGGu--GGUUGuuUGGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 122940 0.69 0.844373
Target:  5'- -uCAUCGCCGCCGucaACAAACaCugCCAa -3'
miRNA:   3'- gcGUAGUGGUGGU---UGUUUGgGugGGU- -5'
11197 5' -53.3 NC_002816.1 + 40349 0.69 0.835925
Target:  5'- gGCGUguCCAaCGACAAACaauCCACCCGg -3'
miRNA:   3'- gCGUAguGGUgGUUGUUUG---GGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 19438 0.69 0.835925
Target:  5'- --aGUCccCCGCCAAUGAACCCGCCg- -3'
miRNA:   3'- gcgUAGu-GGUGGUUGUUUGGGUGGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.