miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11197 5' -53.3 NC_002816.1 + 95015 0.66 0.938283
Target:  5'- uGCGUUuuCCGCCAGUAGacucuuguuguGCUCACCCAa -3'
miRNA:   3'- gCGUAGu-GGUGGUUGUU-----------UGGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 116047 0.66 0.937786
Target:  5'- -cCGUCACCAUCAacuguuuuauugcGCAguuaGACCCACUCu -3'
miRNA:   3'- gcGUAGUGGUGGU-------------UGU----UUGGGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 80038 0.66 0.93372
Target:  5'- aCGCAUCAUCAUguaccccuucauggaGACAAuggaaGCCaCACCCAa -3'
miRNA:   3'- -GCGUAGUGGUGg--------------UUGUU-----UGG-GUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 59402 0.66 0.9332
Target:  5'- uGCGUCGCC-CUgaaaAACAugauuGCCCACUCu -3'
miRNA:   3'- gCGUAGUGGuGG----UUGUu----UGGGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 36858 0.66 0.9332
Target:  5'- aGCaAUCA-CACgCAACccuCCCACCCAa -3'
miRNA:   3'- gCG-UAGUgGUG-GUUGuuuGGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 49518 0.66 0.9332
Target:  5'- aGCGUgcuagagucCACCAUUAACAAcauGCUCACUCAa -3'
miRNA:   3'- gCGUA---------GUGGUGGUUGUU---UGGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 96627 0.66 0.9332
Target:  5'- uCGCG-CACCACCAACuuguGAUaCugCCGa -3'
miRNA:   3'- -GCGUaGUGGUGGUUGu---UUGgGugGGU- -5'
11197 5' -53.3 NC_002816.1 + 6180 0.66 0.9332
Target:  5'- cCGCGUCAauuucCCACgcaAACAAuCCC-CCCAa -3'
miRNA:   3'- -GCGUAGU-----GGUGg--UUGUUuGGGuGGGU- -5'
11197 5' -53.3 NC_002816.1 + 458 0.67 0.927861
Target:  5'- aCGaCGUgAuCCGCCAACaAGACCCcuacuacguggGCCCAa -3'
miRNA:   3'- -GC-GUAgU-GGUGGUUG-UUUGGG-----------UGGGU- -5'
11197 5' -53.3 NC_002816.1 + 14141 0.67 0.927861
Target:  5'- gGguUCugaCACCAACGccGAUCCAUCCAc -3'
miRNA:   3'- gCguAGug-GUGGUUGU--UUGGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 85572 0.67 0.924534
Target:  5'- uGUAUC-UCGCCAACAAuuuuaacuuugaauUCCACCCGg -3'
miRNA:   3'- gCGUAGuGGUGGUUGUUu-------------GGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 38146 0.67 0.922265
Target:  5'- aGCGUguUCAUUGACAcaGugCCGCCCAc -3'
miRNA:   3'- gCGUAguGGUGGUUGU--UugGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 50595 0.67 0.916413
Target:  5'- cCGUuaCGCUACCAACAccGACuuuuauguuCCACCCAa -3'
miRNA:   3'- -GCGuaGUGGUGGUUGU--UUG---------GGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 32564 0.67 0.910305
Target:  5'- aGCGUUGCCgGCCGuGCGugUCCACCCc -3'
miRNA:   3'- gCGUAGUGG-UGGU-UGUuuGGGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 8681 0.67 0.910305
Target:  5'- gGC-UCGuuuuCCGCCGACAccacCCCGCCCu -3'
miRNA:   3'- gCGuAGU----GGUGGUUGUuu--GGGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 30652 0.67 0.910305
Target:  5'- cCGCGUUcaaaACCACCAcCAAACCC-CUa- -3'
miRNA:   3'- -GCGUAG----UGGUGGUuGUUUGGGuGGgu -5'
11197 5' -53.3 NC_002816.1 + 106251 0.67 0.90968
Target:  5'- gGCGUCAUCAUCAGCuu-CCaacacauauuguuCGCCCAu -3'
miRNA:   3'- gCGUAGUGGUGGUUGuuuGG-------------GUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 113593 0.67 0.903943
Target:  5'- cCGCucCACCACCuGACc-ACCCACCUu -3'
miRNA:   3'- -GCGuaGUGGUGG-UUGuuUGGGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 12314 0.68 0.897331
Target:  5'- cCGuCAUCAucuCCACCAcCAAuugcuCCUGCCCAa -3'
miRNA:   3'- -GC-GUAGU---GGUGGUuGUUu----GGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 8911 0.68 0.897331
Target:  5'- cCGUAUC-CCACCAGCAAcACCgcgugauucaGCCCu -3'
miRNA:   3'- -GCGUAGuGGUGGUUGUU-UGGg---------UGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.