miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11197 5' -53.3 NC_002816.1 + 46322 0.66 0.947686
Target:  5'- cCGCGacccuUCAcCCACCGACcccuAACaccaCCACCCGa -3'
miRNA:   3'- -GCGU-----AGU-GGUGGUUGu---UUG----GGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 117754 0.66 0.947686
Target:  5'- --uGUUACCACCAcACcgucccucaGAACCCACUCGa -3'
miRNA:   3'- gcgUAGUGGUGGU-UG---------UUUGGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 45209 0.66 0.947686
Target:  5'- uGCuuaacCGCCGCCAcGCugucCCCACCCu -3'
miRNA:   3'- gCGua---GUGGUGGU-UGuuu-GGGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 510 0.66 0.947686
Target:  5'- gCGCAUCaACCucuCCAaaaagggcuuuGCGuuCCCGCUCAc -3'
miRNA:   3'- -GCGUAG-UGGu--GGU-----------UGUuuGGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 53051 0.66 0.947686
Target:  5'- gGUGUCAuCCACC-ACAggUgCAUCCAg -3'
miRNA:   3'- gCGUAGU-GGUGGuUGUuuGgGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 27508 0.66 0.943111
Target:  5'- cCGCAuUCAgCGCCucCAAACCCuCCgCAu -3'
miRNA:   3'- -GCGU-AGUgGUGGuuGUUUGGGuGG-GU- -5'
11197 5' -53.3 NC_002816.1 + 95015 0.66 0.938283
Target:  5'- uGCGUUuuCCGCCAGUAGacucuuguuguGCUCACCCAa -3'
miRNA:   3'- gCGUAGu-GGUGGUUGUU-----------UGGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 32816 0.66 0.947686
Target:  5'- -aCAUCACCGCaguACuauacAACaCCACCCAc -3'
miRNA:   3'- gcGUAGUGGUGgu-UGu----UUG-GGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 50595 0.67 0.916413
Target:  5'- cCGUuaCGCUACCAACAccGACuuuuauguuCCACCCAa -3'
miRNA:   3'- -GCGuaGUGGUGGUUGU--UUG---------GGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 85572 0.67 0.924534
Target:  5'- uGUAUC-UCGCCAACAAuuuuaacuuugaauUCCACCCGg -3'
miRNA:   3'- gCGUAGuGGUGGUUGUUu-------------GGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 32564 0.67 0.910305
Target:  5'- aGCGUUGCCgGCCGuGCGugUCCACCCc -3'
miRNA:   3'- gCGUAGUGG-UGGU-UGUuuGGGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 14141 0.67 0.927861
Target:  5'- gGguUCugaCACCAACGccGAUCCAUCCAc -3'
miRNA:   3'- gCguAGug-GUGGUUGU--UUGGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 38146 0.67 0.922265
Target:  5'- aGCGUguUCAUUGACAcaGugCCGCCCAc -3'
miRNA:   3'- gCGUAguGGUGGUUGU--UugGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 30652 0.67 0.910305
Target:  5'- cCGCGUUcaaaACCACCAcCAAACCC-CUa- -3'
miRNA:   3'- -GCGUAG----UGGUGGUuGUUUGGGuGGgu -5'
11197 5' -53.3 NC_002816.1 + 8681 0.67 0.910305
Target:  5'- gGC-UCGuuuuCCGCCGACAccacCCCGCCCu -3'
miRNA:   3'- gCGuAGU----GGUGGUUGUuu--GGGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 106251 0.67 0.90968
Target:  5'- gGCGUCAUCAUCAGCuu-CCaacacauauuguuCGCCCAu -3'
miRNA:   3'- gCGUAGUGGUGGUUGuuuGG-------------GUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 113593 0.67 0.903943
Target:  5'- cCGCucCACCACCuGACc-ACCCACCUu -3'
miRNA:   3'- -GCGuaGUGGUGG-UUGuuUGGGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 458 0.67 0.927861
Target:  5'- aCGaCGUgAuCCGCCAACaAGACCCcuacuacguggGCCCAa -3'
miRNA:   3'- -GC-GUAgU-GGUGGUUG-UUUGGG-----------UGGGU- -5'
11197 5' -53.3 NC_002816.1 + 121406 0.68 0.890471
Target:  5'- -cCAUCACaggguguacguuCACCAACAguAGCaCCACCCGu -3'
miRNA:   3'- gcGUAGUG------------GUGGUUGU--UUG-GGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 12314 0.68 0.897331
Target:  5'- cCGuCAUCAucuCCACCAcCAAuugcuCCUGCCCAa -3'
miRNA:   3'- -GC-GUAGU---GGUGGUuGUUu----GGGUGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.