miRNA display CGI


Results 21 - 40 of 94 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11197 5' -53.3 NC_002816.1 + 112860 0.71 0.752017
Target:  5'- uGCGgagaCACCACCAACGccGACgaCACCCu -3'
miRNA:   3'- gCGUa---GUGGUGGUUGU--UUGg-GUGGGu -5'
11197 5' -53.3 NC_002816.1 + 37797 0.7 0.771713
Target:  5'- uGCAU-GCC-CCAACAc-CCCACCCGc -3'
miRNA:   3'- gCGUAgUGGuGGUUGUuuGGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 76540 0.7 0.781365
Target:  5'- uGCcuUCGCCACgGAuCAucGCCCACCCu -3'
miRNA:   3'- gCGu-AGUGGUGgUU-GUu-UGGGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 41948 0.7 0.781365
Target:  5'- cCGCA--ACCuCCAGCAAACCC-CUCAa -3'
miRNA:   3'- -GCGUagUGGuGGUUGUUUGGGuGGGU- -5'
11197 5' -53.3 NC_002816.1 + 112057 0.7 0.790874
Target:  5'- gCGCAUCuCCucauCCAACAcguCCCACgCCGg -3'
miRNA:   3'- -GCGUAGuGGu---GGUUGUuu-GGGUG-GGU- -5'
11197 5' -53.3 NC_002816.1 + 84450 0.7 0.790874
Target:  5'- uGCgAUCGCC-CCAACGucGAUCUACCCc -3'
miRNA:   3'- gCG-UAGUGGuGGUUGU--UUGGGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 82333 0.7 0.800229
Target:  5'- aGUgagCACCACCGACAAAUUCAUCUc -3'
miRNA:   3'- gCGua-GUGGUGGUUGUUUGGGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 7468 0.7 0.800229
Target:  5'- uCGCAcaaccUCACCGCCAcACuacuCCUACCCc -3'
miRNA:   3'- -GCGU-----AGUGGUGGU-UGuuu-GGGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 109375 0.7 0.800229
Target:  5'- cCGCAUUACCACCAaaaacucugagACGGGCCgcuuCGCCg- -3'
miRNA:   3'- -GCGUAGUGGUGGU-----------UGUUUGG----GUGGgu -5'
11197 5' -53.3 NC_002816.1 + 67232 0.7 0.809421
Target:  5'- aCGCAgCACCACCAACGuugUCCGCaUCAc -3'
miRNA:   3'- -GCGUaGUGGUGGUUGUuu-GGGUG-GGU- -5'
11197 5' -53.3 NC_002816.1 + 36923 0.69 0.827278
Target:  5'- uCGuCGUCAUCACCc---AAUCCACCCAu -3'
miRNA:   3'- -GC-GUAGUGGUGGuuguUUGGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 32064 0.69 0.827278
Target:  5'- uGCccagCACCACC-ACA--UCCACCCAg -3'
miRNA:   3'- gCGua--GUGGUGGuUGUuuGGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 19438 0.69 0.835925
Target:  5'- --aGUCccCCGCCAAUGAACCCGCCg- -3'
miRNA:   3'- gcgUAGu-GGUGGUUGUUUGGGUGGgu -5'
11197 5' -53.3 NC_002816.1 + 30207 0.69 0.835925
Target:  5'- aCGUcUCACCACCGAC---CCCACUg- -3'
miRNA:   3'- -GCGuAGUGGUGGUUGuuuGGGUGGgu -5'
11197 5' -53.3 NC_002816.1 + 40349 0.69 0.835925
Target:  5'- gGCGUguCCAaCGACAAACaauCCACCCGg -3'
miRNA:   3'- gCGUAguGGUgGUUGUUUG---GGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 12637 0.69 0.835925
Target:  5'- aGCAcaAUCGCCAuuuguucgaucGCGAGCCCGCCUc -3'
miRNA:   3'- gCGUagUGGUGGU-----------UGUUUGGGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 122940 0.69 0.844373
Target:  5'- -uCAUCGCCGCCGucaACAAACaCugCCAa -3'
miRNA:   3'- gcGUAGUGGUGGU---UGUUUGgGugGGU- -5'
11197 5' -53.3 NC_002816.1 + 18199 0.69 0.852614
Target:  5'- gCGCAggGCCucuUCGGC--ACCCACCCAc -3'
miRNA:   3'- -GCGUagUGGu--GGUUGuuUGGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 85136 0.69 0.860641
Target:  5'- uGCccCACCACCGuaaucaACAcACCCACCa- -3'
miRNA:   3'- gCGuaGUGGUGGU------UGUuUGGGUGGgu -5'
11197 5' -53.3 NC_002816.1 + 84099 0.68 0.868446
Target:  5'- uCGUuaCACaCACCAaugaGCGGACCCACCa- -3'
miRNA:   3'- -GCGuaGUG-GUGGU----UGUUUGGGUGGgu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.