miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11197 5' -53.3 NC_002816.1 + 68048 1.1 0.003464
Target:  5'- aCGCAUCACCACCAACAAACCCACCCAa -3'
miRNA:   3'- -GCGUAGUGGUGGUUGUUUGGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 55601 0.82 0.21358
Target:  5'- aCGCAUCACCACCGGCAcacaugaucccAACCgGCUCGu -3'
miRNA:   3'- -GCGUAGUGGUGGUUGU-----------UUGGgUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 64569 0.8 0.302128
Target:  5'- aGCcguUCcguCCGCCAACGAGCUCACCCAg -3'
miRNA:   3'- gCGu--AGu--GGUGGUUGUUUGGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 80839 0.79 0.309432
Target:  5'- gCGCAUCGCUAUCAcaucGCcguaAAACCCGCCCAc -3'
miRNA:   3'- -GCGUAGUGGUGGU----UG----UUUGGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 64935 0.79 0.32444
Target:  5'- aCGCuacgCACCACCcuACAAACCCACCa- -3'
miRNA:   3'- -GCGua--GUGGUGGu-UGUUUGGGUGGgu -5'
11197 5' -53.3 NC_002816.1 + 39351 0.77 0.416415
Target:  5'- uGUAUCAcgcCCACCAACAAAUCCACUa- -3'
miRNA:   3'- gCGUAGU---GGUGGUUGUUUGGGUGGgu -5'
11197 5' -53.3 NC_002816.1 + 43583 0.76 0.482624
Target:  5'- aGCucaACCACCAACAcccGAgCCGCCCAg -3'
miRNA:   3'- gCGuagUGGUGGUUGU---UUgGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 28728 0.75 0.502468
Target:  5'- aGCAaUACCuCCAAUAAACCCACCg- -3'
miRNA:   3'- gCGUaGUGGuGGUUGUUUGGGUGGgu -5'
11197 5' -53.3 NC_002816.1 + 60883 0.74 0.57437
Target:  5'- aCGCGcgCACCuCCAACAAcACCUGCCCu -3'
miRNA:   3'- -GCGUa-GUGGuGGUUGUU-UGGGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 8624 0.74 0.584872
Target:  5'- uGCAUCAguCCACCGGCAcACCCAUUa- -3'
miRNA:   3'- gCGUAGU--GGUGGUUGUuUGGGUGGgu -5'
11197 5' -53.3 NC_002816.1 + 113425 0.73 0.605977
Target:  5'- gGCAUCGuccuCCGCC-ACGAACCUGCUCAa -3'
miRNA:   3'- gCGUAGU----GGUGGuUGUUUGGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 38972 0.73 0.64837
Target:  5'- uGCuaaCAcCCACCAACAucuuACUCACCCAc -3'
miRNA:   3'- gCGua-GU-GGUGGUUGUu---UGGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 115794 0.72 0.669519
Target:  5'- uGCAUCAUCACCGAUuucAACaaucucuaCACCCAu -3'
miRNA:   3'- gCGUAGUGGUGGUUGu--UUGg-------GUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 57189 0.72 0.676895
Target:  5'- gCGUAUCACCACCAcccaauuguggaacACAGugCaCGCCUc -3'
miRNA:   3'- -GCGUAGUGGUGGU--------------UGUUugG-GUGGGu -5'
11197 5' -53.3 NC_002816.1 + 71580 0.72 0.700974
Target:  5'- gGCGUCAUucucuccaCACCAACAcucacGCCCACCUu -3'
miRNA:   3'- gCGUAGUG--------GUGGUUGUu----UGGGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 110778 0.71 0.718566
Target:  5'- uGCAUCGCaugagccgccuccuCACCAACAAccauCCCACCa- -3'
miRNA:   3'- gCGUAGUG--------------GUGGUUGUUu---GGGUGGgu -5'
11197 5' -53.3 NC_002816.1 + 121040 0.71 0.721649
Target:  5'- cCGCcUCAuCUAUCGACugcAACCCACCCu -3'
miRNA:   3'- -GCGuAGU-GGUGGUUGu--UUGGGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 17378 0.71 0.741994
Target:  5'- aGCAcUCGCCACaCAAguGACCgACCUAc -3'
miRNA:   3'- gCGU-AGUGGUG-GUUguUUGGgUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 8797 0.71 0.752017
Target:  5'- cCGU-UCACCACCAACA-GCUCGCgCAg -3'
miRNA:   3'- -GCGuAGUGGUGGUUGUuUGGGUGgGU- -5'
11197 5' -53.3 NC_002816.1 + 34921 0.71 0.752017
Target:  5'- aCGUuaaacgCGCCACCAACccAUCCACCUg -3'
miRNA:   3'- -GCGua----GUGGUGGUUGuuUGGGUGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.