miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11197 5' -53.3 NC_002816.1 + 72257 0.68 0.883367
Target:  5'- uGUAcagCGCCAUCGACAAGgauCUCACCCu -3'
miRNA:   3'- gCGUa--GUGGUGGUUGUUU---GGGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 37797 0.7 0.771713
Target:  5'- uGCAU-GCC-CCAACAc-CCCACCCGc -3'
miRNA:   3'- gCGUAgUGGuGGUUGUuuGGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 76540 0.7 0.781365
Target:  5'- uGCcuUCGCCACgGAuCAucGCCCACCCu -3'
miRNA:   3'- gCGu-AGUGGUGgUU-GUu-UGGGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 7468 0.7 0.800229
Target:  5'- uCGCAcaaccUCACCGCCAcACuacuCCUACCCc -3'
miRNA:   3'- -GCGU-----AGUGGUGGU-UGuuu-GGGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 67232 0.7 0.809421
Target:  5'- aCGCAgCACCACCAACGuugUCCGCaUCAc -3'
miRNA:   3'- -GCGUaGUGGUGGUUGUuu-GGGUG-GGU- -5'
11197 5' -53.3 NC_002816.1 + 36923 0.69 0.827278
Target:  5'- uCGuCGUCAUCACCc---AAUCCACCCAu -3'
miRNA:   3'- -GC-GUAGUGGUGGuuguUUGGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 122940 0.69 0.844373
Target:  5'- -uCAUCGCCGCCGucaACAAACaCugCCAa -3'
miRNA:   3'- gcGUAGUGGUGGU---UGUUUGgGugGGU- -5'
11197 5' -53.3 NC_002816.1 + 24900 0.68 0.876023
Target:  5'- uGUGUCAaccagugaaacCCACUu-CGAACCCGCCCu -3'
miRNA:   3'- gCGUAGU-----------GGUGGuuGUUUGGGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 31337 0.68 0.876023
Target:  5'- uGC-UCACCGCCAACcugucaCCAUCCu -3'
miRNA:   3'- gCGuAGUGGUGGUUGuuug--GGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 112860 0.71 0.752017
Target:  5'- uGCGgagaCACCACCAACGccGACgaCACCCu -3'
miRNA:   3'- gCGUa---GUGGUGGUUGU--UUGg-GUGGGu -5'
11197 5' -53.3 NC_002816.1 + 17378 0.71 0.741994
Target:  5'- aGCAcUCGCCACaCAAguGACCgACCUAc -3'
miRNA:   3'- gCGU-AGUGGUG-GUUguUUGGgUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 121040 0.71 0.721649
Target:  5'- cCGCcUCAuCUAUCGACugcAACCCACCCu -3'
miRNA:   3'- -GCGuAGU-GGUGGUUGu--UUGGGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 55601 0.82 0.21358
Target:  5'- aCGCAUCACCACCGGCAcacaugaucccAACCgGCUCGu -3'
miRNA:   3'- -GCGUAGUGGUGGUUGU-----------UUGGgUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 39351 0.77 0.416415
Target:  5'- uGUAUCAcgcCCACCAACAAAUCCACUa- -3'
miRNA:   3'- gCGUAGU---GGUGGUUGUUUGGGUGGgu -5'
11197 5' -53.3 NC_002816.1 + 43583 0.76 0.482624
Target:  5'- aGCucaACCACCAACAcccGAgCCGCCCAg -3'
miRNA:   3'- gCGuagUGGUGGUUGU---UUgGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 28728 0.75 0.502468
Target:  5'- aGCAaUACCuCCAAUAAACCCACCg- -3'
miRNA:   3'- gCGUaGUGGuGGUUGUUUGGGUGGgu -5'
11197 5' -53.3 NC_002816.1 + 60883 0.74 0.57437
Target:  5'- aCGCGcgCACCuCCAACAAcACCUGCCCu -3'
miRNA:   3'- -GCGUa-GUGGuGGUUGUU-UGGGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 113425 0.73 0.605977
Target:  5'- gGCAUCGuccuCCGCC-ACGAACCUGCUCAa -3'
miRNA:   3'- gCGUAGU----GGUGGuUGUUUGGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 38972 0.73 0.64837
Target:  5'- uGCuaaCAcCCACCAACAucuuACUCACCCAc -3'
miRNA:   3'- gCGua-GU-GGUGGUUGUu---UGGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 57189 0.72 0.676895
Target:  5'- gCGUAUCACCACCAcccaauuguggaacACAGugCaCGCCUc -3'
miRNA:   3'- -GCGUAGUGGUGGU--------------UGUUugG-GUGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.