Results 1 - 20 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11197 | 5' | -53.3 | NC_002816.1 | + | 121387 | 0.66 | 0.95609 |
Target: 5'- aCGC--CACCACCAugGAccACCgUGCCCu -3' miRNA: 3'- -GCGuaGUGGUGGUugUU--UGG-GUGGGu -5' |
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11197 | 5' | -53.3 | NC_002816.1 | + | 8911 | 0.68 | 0.897331 |
Target: 5'- cCGUAUC-CCACCAGCAAcACCgcgugauucaGCCCu -3' miRNA: 3'- -GCGUAGuGGUGGUUGUU-UGGg---------UGGGu -5' |
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11197 | 5' | -53.3 | NC_002816.1 | + | 110401 | 0.68 | 0.890471 |
Target: 5'- aCGUGUCGCUGCaCAACAccaCCGCCUAc -3' miRNA: 3'- -GCGUAGUGGUG-GUUGUuugGGUGGGU- -5' |
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11197 | 5' | -53.3 | NC_002816.1 | + | 64569 | 0.8 | 0.302128 |
Target: 5'- aGCcguUCcguCCGCCAACGAGCUCACCCAg -3' miRNA: 3'- gCGu--AGu--GGUGGUUGUUUGGGUGGGU- -5' |
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11197 | 5' | -53.3 | NC_002816.1 | + | 27508 | 0.66 | 0.943111 |
Target: 5'- cCGCAuUCAgCGCCucCAAACCCuCCgCAu -3' miRNA: 3'- -GCGU-AGUgGUGGuuGUUUGGGuGG-GU- -5' |
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11197 | 5' | -53.3 | NC_002816.1 | + | 27556 | 0.66 | 0.943111 |
Target: 5'- cCGCAuUCAgCGCCucCAAACCCuCCgCAu -3' miRNA: 3'- -GCGU-AGUgGUGGuuGUUUGGGuGG-GU- -5' |
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11197 | 5' | -53.3 | NC_002816.1 | + | 116047 | 0.66 | 0.937786 |
Target: 5'- -cCGUCACCAUCAacuguuuuauugcGCAguuaGACCCACUCu -3' miRNA: 3'- gcGUAGUGGUGGU-------------UGU----UUGGGUGGGu -5' |
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11197 | 5' | -53.3 | NC_002816.1 | + | 36858 | 0.66 | 0.9332 |
Target: 5'- aGCaAUCA-CACgCAACccuCCCACCCAa -3' miRNA: 3'- gCG-UAGUgGUG-GUUGuuuGGGUGGGU- -5' |
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11197 | 5' | -53.3 | NC_002816.1 | + | 14141 | 0.67 | 0.927861 |
Target: 5'- gGguUCugaCACCAACGccGAUCCAUCCAc -3' miRNA: 3'- gCguAGug-GUGGUUGU--UUGGGUGGGU- -5' |
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11197 | 5' | -53.3 | NC_002816.1 | + | 106251 | 0.67 | 0.90968 |
Target: 5'- gGCGUCAUCAUCAGCuu-CCaacacauauuguuCGCCCAu -3' miRNA: 3'- gCGUAGUGGUGGUUGuuuGG-------------GUGGGU- -5' |
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11197 | 5' | -53.3 | NC_002816.1 | + | 50595 | 0.67 | 0.916413 |
Target: 5'- cCGUuaCGCUACCAACAccGACuuuuauguuCCACCCAa -3' miRNA: 3'- -GCGuaGUGGUGGUUGU--UUG---------GGUGGGU- -5' |
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11197 | 5' | -53.3 | NC_002816.1 | + | 59402 | 0.66 | 0.9332 |
Target: 5'- uGCGUCGCC-CUgaaaAACAugauuGCCCACUCu -3' miRNA: 3'- gCGUAGUGGuGG----UUGUu----UGGGUGGGu -5' |
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11197 | 5' | -53.3 | NC_002816.1 | + | 32816 | 0.66 | 0.947686 |
Target: 5'- -aCAUCACCGCaguACuauacAACaCCACCCAc -3' miRNA: 3'- gcGUAGUGGUGgu-UGu----UUG-GGUGGGU- -5' |
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11197 | 5' | -53.3 | NC_002816.1 | + | 30652 | 0.67 | 0.910305 |
Target: 5'- cCGCGUUcaaaACCACCAcCAAACCC-CUa- -3' miRNA: 3'- -GCGUAG----UGGUGGUuGUUUGGGuGGgu -5' |
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11197 | 5' | -53.3 | NC_002816.1 | + | 117754 | 0.66 | 0.947686 |
Target: 5'- --uGUUACCACCAcACcgucccucaGAACCCACUCGa -3' miRNA: 3'- gcgUAGUGGUGGU-UG---------UUUGGGUGGGU- -5' |
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11197 | 5' | -53.3 | NC_002816.1 | + | 49518 | 0.66 | 0.9332 |
Target: 5'- aGCGUgcuagagucCACCAUUAACAAcauGCUCACUCAa -3' miRNA: 3'- gCGUA---------GUGGUGGUUGUU---UGGGUGGGU- -5' |
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11197 | 5' | -53.3 | NC_002816.1 | + | 8681 | 0.67 | 0.910305 |
Target: 5'- gGC-UCGuuuuCCGCCGACAccacCCCGCCCu -3' miRNA: 3'- gCGuAGU----GGUGGUUGUuu--GGGUGGGu -5' |
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11197 | 5' | -53.3 | NC_002816.1 | + | 30554 | 0.68 | 0.896656 |
Target: 5'- uGCAUCACCA-------ACCCACCCc -3' miRNA: 3'- gCGUAGUGGUgguuguuUGGGUGGGu -5' |
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11197 | 5' | -53.3 | NC_002816.1 | + | 53051 | 0.66 | 0.947686 |
Target: 5'- gGUGUCAuCCACC-ACAggUgCAUCCAg -3' miRNA: 3'- gCGUAGU-GGUGGuUGUuuGgGUGGGU- -5' |
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11197 | 5' | -53.3 | NC_002816.1 | + | 95015 | 0.66 | 0.938283 |
Target: 5'- uGCGUUuuCCGCCAGUAGacucuuguuguGCUCACCCAa -3' miRNA: 3'- gCGUAGu-GGUGGUUGUU-----------UGGGUGGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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