miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11197 5' -53.3 NC_002816.1 + 117 0.66 0.95609
Target:  5'- cCGCAUcCGCgaaGCCGaguACGAGCCCAUCa- -3'
miRNA:   3'- -GCGUA-GUGg--UGGU---UGUUUGGGUGGgu -5'
11197 5' -53.3 NC_002816.1 + 458 0.67 0.927861
Target:  5'- aCGaCGUgAuCCGCCAACaAGACCCcuacuacguggGCCCAa -3'
miRNA:   3'- -GC-GUAgU-GGUGGUUG-UUUGGG-----------UGGGU- -5'
11197 5' -53.3 NC_002816.1 + 510 0.66 0.947686
Target:  5'- gCGCAUCaACCucuCCAaaaagggcuuuGCGuuCCCGCUCAc -3'
miRNA:   3'- -GCGUAG-UGGu--GGU-----------UGUuuGGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 6180 0.66 0.9332
Target:  5'- cCGCGUCAauuucCCACgcaAACAAuCCC-CCCAa -3'
miRNA:   3'- -GCGUAGU-----GGUGg--UUGUUuGGGuGGGU- -5'
11197 5' -53.3 NC_002816.1 + 7468 0.7 0.800229
Target:  5'- uCGCAcaaccUCACCGCCAcACuacuCCUACCCc -3'
miRNA:   3'- -GCGU-----AGUGGUGGU-UGuuu-GGGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 8624 0.74 0.584872
Target:  5'- uGCAUCAguCCACCGGCAcACCCAUUa- -3'
miRNA:   3'- gCGUAGU--GGUGGUUGUuUGGGUGGgu -5'
11197 5' -53.3 NC_002816.1 + 8681 0.67 0.910305
Target:  5'- gGC-UCGuuuuCCGCCGACAccacCCCGCCCu -3'
miRNA:   3'- gCGuAGU----GGUGGUUGUuu--GGGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 8797 0.71 0.752017
Target:  5'- cCGU-UCACCACCAACA-GCUCGCgCAg -3'
miRNA:   3'- -GCGuAGUGGUGGUUGUuUGGGUGgGU- -5'
11197 5' -53.3 NC_002816.1 + 8911 0.68 0.897331
Target:  5'- cCGUAUC-CCACCAGCAAcACCgcgugauucaGCCCu -3'
miRNA:   3'- -GCGUAGuGGUGGUUGUU-UGGg---------UGGGu -5'
11197 5' -53.3 NC_002816.1 + 12314 0.68 0.897331
Target:  5'- cCGuCAUCAucuCCACCAcCAAuugcuCCUGCCCAa -3'
miRNA:   3'- -GC-GUAGU---GGUGGUuGUUu----GGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 12637 0.69 0.835925
Target:  5'- aGCAcaAUCGCCAuuuguucgaucGCGAGCCCGCCUc -3'
miRNA:   3'- gCGUagUGGUGGU-----------UGUUUGGGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 14141 0.67 0.927861
Target:  5'- gGguUCugaCACCAACGccGAUCCAUCCAc -3'
miRNA:   3'- gCguAGug-GUGGUUGU--UUGGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 14855 0.66 0.938283
Target:  5'- uCGUAccgCACCGCCuGAC--ACCCGCCUc -3'
miRNA:   3'- -GCGUa--GUGGUGG-UUGuuUGGGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 17378 0.71 0.741994
Target:  5'- aGCAcUCGCCACaCAAguGACCgACCUAc -3'
miRNA:   3'- gCGU-AGUGGUG-GUUguUUGGgUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 17460 0.68 0.890471
Target:  5'- gGUGaucUCACCACCAACAucGACacucaguuggCCGCCCu -3'
miRNA:   3'- gCGU---AGUGGUGGUUGU--UUG----------GGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 18199 0.69 0.852614
Target:  5'- gCGCAggGCCucuUCGGC--ACCCACCCAc -3'
miRNA:   3'- -GCGUagUGGu--GGUUGuuUGGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 19438 0.69 0.835925
Target:  5'- --aGUCccCCGCCAAUGAACCCGCCg- -3'
miRNA:   3'- gcgUAGu-GGUGGUUGUUUGGGUGGgu -5'
11197 5' -53.3 NC_002816.1 + 19566 0.68 0.889771
Target:  5'- uCGCGaCACCACCAucgcuguGCGGuUCCACCaCAa -3'
miRNA:   3'- -GCGUaGUGGUGGU-------UGUUuGGGUGG-GU- -5'
11197 5' -53.3 NC_002816.1 + 23142 0.68 0.883367
Target:  5'- gCGCuggaCcCCGCCGACAuuCCC-CCCAu -3'
miRNA:   3'- -GCGua--GuGGUGGUUGUuuGGGuGGGU- -5'
11197 5' -53.3 NC_002816.1 + 24900 0.68 0.876023
Target:  5'- uGUGUCAaccagugaaacCCACUu-CGAACCCGCCCu -3'
miRNA:   3'- gCGUAGU-----------GGUGGuuGUUUGGGUGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.