miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11197 5' -53.3 NC_002816.1 + 122940 0.69 0.844373
Target:  5'- -uCAUCGCCGCCGucaACAAACaCugCCAa -3'
miRNA:   3'- gcGUAGUGGUGGU---UGUUUGgGugGGU- -5'
11197 5' -53.3 NC_002816.1 + 121406 0.68 0.890471
Target:  5'- -cCAUCACaggguguacguuCACCAACAguAGCaCCACCCGu -3'
miRNA:   3'- gcGUAGUG------------GUGGUUGU--UUG-GGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 121387 0.66 0.95609
Target:  5'- aCGC--CACCACCAugGAccACCgUGCCCu -3'
miRNA:   3'- -GCGuaGUGGUGGUugUU--UGG-GUGGGu -5'
11197 5' -53.3 NC_002816.1 + 121040 0.71 0.721649
Target:  5'- cCGCcUCAuCUAUCGACugcAACCCACCCu -3'
miRNA:   3'- -GCGuAGU-GGUGGUUGu--UUGGGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 117754 0.66 0.947686
Target:  5'- --uGUUACCACCAcACcgucccucaGAACCCACUCGa -3'
miRNA:   3'- gcgUAGUGGUGGU-UG---------UUUGGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 116047 0.66 0.937786
Target:  5'- -cCGUCACCAUCAacuguuuuauugcGCAguuaGACCCACUCu -3'
miRNA:   3'- gcGUAGUGGUGGU-------------UGU----UUGGGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 115794 0.72 0.669519
Target:  5'- uGCAUCAUCACCGAUuucAACaaucucuaCACCCAu -3'
miRNA:   3'- gCGUAGUGGUGGUUGu--UUGg-------GUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 113593 0.67 0.903943
Target:  5'- cCGCucCACCACCuGACc-ACCCACCUu -3'
miRNA:   3'- -GCGuaGUGGUGG-UUGuuUGGGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 113425 0.73 0.605977
Target:  5'- gGCAUCGuccuCCGCC-ACGAACCUGCUCAa -3'
miRNA:   3'- gCGUAGU----GGUGGuUGUUUGGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 112860 0.71 0.752017
Target:  5'- uGCGgagaCACCACCAACGccGACgaCACCCu -3'
miRNA:   3'- gCGUa---GUGGUGGUUGU--UUGg-GUGGGu -5'
11197 5' -53.3 NC_002816.1 + 112057 0.7 0.790874
Target:  5'- gCGCAUCuCCucauCCAACAcguCCCACgCCGg -3'
miRNA:   3'- -GCGUAGuGGu---GGUUGUuu-GGGUG-GGU- -5'
11197 5' -53.3 NC_002816.1 + 110778 0.71 0.718566
Target:  5'- uGCAUCGCaugagccgccuccuCACCAACAAccauCCCACCa- -3'
miRNA:   3'- gCGUAGUG--------------GUGGUUGUUu---GGGUGGgu -5'
11197 5' -53.3 NC_002816.1 + 110401 0.68 0.890471
Target:  5'- aCGUGUCGCUGCaCAACAccaCCGCCUAc -3'
miRNA:   3'- -GCGUAGUGGUG-GUUGUuugGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 109375 0.7 0.800229
Target:  5'- cCGCAUUACCACCAaaaacucugagACGGGCCgcuuCGCCg- -3'
miRNA:   3'- -GCGUAGUGGUGGU-----------UGUUUGG----GUGGgu -5'
11197 5' -53.3 NC_002816.1 + 107794 0.68 0.878989
Target:  5'- -uCAgCGCCACCAACAGcgcacuuuugcccguACCCGCCg- -3'
miRNA:   3'- gcGUaGUGGUGGUUGUU---------------UGGGUGGgu -5'
11197 5' -53.3 NC_002816.1 + 106251 0.67 0.90968
Target:  5'- gGCGUCAUCAUCAGCuu-CCaacacauauuguuCGCCCAu -3'
miRNA:   3'- gCGUAGUGGUGGUUGuuuGG-------------GUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 102181 0.66 0.938283
Target:  5'- gCGCGUCGCuCACCAACcAAUCaCACg-- -3'
miRNA:   3'- -GCGUAGUG-GUGGUUGuUUGG-GUGggu -5'
11197 5' -53.3 NC_002816.1 + 101451 0.66 0.947686
Target:  5'- gCGCAacgaCACUGCCAAUuucaugaaAGACCCuCCCGa -3'
miRNA:   3'- -GCGUa---GUGGUGGUUG--------UUUGGGuGGGU- -5'
11197 5' -53.3 NC_002816.1 + 96627 0.66 0.9332
Target:  5'- uCGCG-CACCACCAACuuguGAUaCugCCGa -3'
miRNA:   3'- -GCGUaGUGGUGGUUGu---UUGgGugGGU- -5'
11197 5' -53.3 NC_002816.1 + 95015 0.66 0.938283
Target:  5'- uGCGUUuuCCGCCAGUAGacucuuguuguGCUCACCCAa -3'
miRNA:   3'- gCGUAGu-GGUGGUUGUU-----------UGGGUGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.