miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11197 5' -53.3 NC_002816.1 + 27508 0.66 0.943111
Target:  5'- cCGCAuUCAgCGCCucCAAACCCuCCgCAu -3'
miRNA:   3'- -GCGU-AGUgGUGGuuGUUUGGGuGG-GU- -5'
11197 5' -53.3 NC_002816.1 + 27556 0.66 0.943111
Target:  5'- cCGCAuUCAgCGCCucCAAACCCuCCgCAu -3'
miRNA:   3'- -GCGU-AGUgGUGGuuGUUUGGGuGG-GU- -5'
11197 5' -53.3 NC_002816.1 + 28728 0.75 0.502468
Target:  5'- aGCAaUACCuCCAAUAAACCCACCg- -3'
miRNA:   3'- gCGUaGUGGuGGUUGUUUGGGUGGgu -5'
11197 5' -53.3 NC_002816.1 + 30207 0.69 0.835925
Target:  5'- aCGUcUCACCACCGAC---CCCACUg- -3'
miRNA:   3'- -GCGuAGUGGUGGUUGuuuGGGUGGgu -5'
11197 5' -53.3 NC_002816.1 + 30554 0.68 0.896656
Target:  5'- uGCAUCACCA-------ACCCACCCc -3'
miRNA:   3'- gCGUAGUGGUgguuguuUGGGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 30652 0.67 0.910305
Target:  5'- cCGCGUUcaaaACCACCAcCAAACCC-CUa- -3'
miRNA:   3'- -GCGUAG----UGGUGGUuGUUUGGGuGGgu -5'
11197 5' -53.3 NC_002816.1 + 31337 0.68 0.876023
Target:  5'- uGC-UCACCGCCAACcugucaCCAUCCu -3'
miRNA:   3'- gCGuAGUGGUGGUUGuuug--GGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 31406 0.66 0.938283
Target:  5'- uCGCAaCAgCAUaCAACAcACCCACCUc -3'
miRNA:   3'- -GCGUaGUgGUG-GUUGUuUGGGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 32064 0.69 0.827278
Target:  5'- uGCccagCACCACC-ACA--UCCACCCAg -3'
miRNA:   3'- gCGua--GUGGUGGuUGUuuGGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 32564 0.67 0.910305
Target:  5'- aGCGUUGCCgGCCGuGCGugUCCACCCc -3'
miRNA:   3'- gCGUAGUGG-UGGU-UGUuuGGGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 32816 0.66 0.947686
Target:  5'- -aCAUCACCGCaguACuauacAACaCCACCCAc -3'
miRNA:   3'- gcGUAGUGGUGgu-UGu----UUG-GGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 34921 0.71 0.752017
Target:  5'- aCGUuaaacgCGCCACCAACccAUCCACCUg -3'
miRNA:   3'- -GCGua----GUGGUGGUUGuuUGGGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 36858 0.66 0.9332
Target:  5'- aGCaAUCA-CACgCAACccuCCCACCCAa -3'
miRNA:   3'- gCG-UAGUgGUG-GUUGuuuGGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 36923 0.69 0.827278
Target:  5'- uCGuCGUCAUCACCc---AAUCCACCCAu -3'
miRNA:   3'- -GC-GUAGUGGUGGuuguUUGGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 37657 0.68 0.890471
Target:  5'- uGUGUCACCACCGGCAGAUaguaagugCCAUUg- -3'
miRNA:   3'- gCGUAGUGGUGGUUGUUUG--------GGUGGgu -5'
11197 5' -53.3 NC_002816.1 + 37797 0.7 0.771713
Target:  5'- uGCAU-GCC-CCAACAc-CCCACCCGc -3'
miRNA:   3'- gCGUAgUGGuGGUUGUuuGGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 38146 0.67 0.922265
Target:  5'- aGCGUguUCAUUGACAcaGugCCGCCCAc -3'
miRNA:   3'- gCGUAguGGUGGUUGU--UugGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 38972 0.73 0.64837
Target:  5'- uGCuaaCAcCCACCAACAucuuACUCACCCAc -3'
miRNA:   3'- gCGua-GU-GGUGGUUGUu---UGGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 39351 0.77 0.416415
Target:  5'- uGUAUCAcgcCCACCAACAAAUCCACUa- -3'
miRNA:   3'- gCGUAGU---GGUGGUUGUUUGGGUGGgu -5'
11197 5' -53.3 NC_002816.1 + 40349 0.69 0.835925
Target:  5'- gGCGUguCCAaCGACAAACaauCCACCCGg -3'
miRNA:   3'- gCGUAguGGUgGUUGUUUG---GGUGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.