miRNA display CGI


Results 41 - 60 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11197 5' -53.3 NC_002816.1 + 41948 0.7 0.781365
Target:  5'- cCGCA--ACCuCCAGCAAACCC-CUCAa -3'
miRNA:   3'- -GCGUagUGGuGGUUGUUUGGGuGGGU- -5'
11197 5' -53.3 NC_002816.1 + 43414 0.66 0.95609
Target:  5'- gGCGagCACCAguUCAGCAGACUCAaccaCCAg -3'
miRNA:   3'- gCGUa-GUGGU--GGUUGUUUGGGUg---GGU- -5'
11197 5' -53.3 NC_002816.1 + 43583 0.76 0.482624
Target:  5'- aGCucaACCACCAACAcccGAgCCGCCCAg -3'
miRNA:   3'- gCGuagUGGUGGUUGU---UUgGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 45209 0.66 0.947686
Target:  5'- uGCuuaacCGCCGCCAcGCugucCCCACCCu -3'
miRNA:   3'- gCGua---GUGGUGGU-UGuuu-GGGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 46285 0.68 0.883367
Target:  5'- aCGCGgaccggugC-CCAUCAACAuGCCCACCa- -3'
miRNA:   3'- -GCGUa-------GuGGUGGUUGUuUGGGUGGgu -5'
11197 5' -53.3 NC_002816.1 + 46322 0.66 0.947686
Target:  5'- cCGCGacccuUCAcCCACCGACcccuAACaccaCCACCCGa -3'
miRNA:   3'- -GCGU-----AGU-GGUGGUUGu---UUG----GGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 49518 0.66 0.9332
Target:  5'- aGCGUgcuagagucCACCAUUAACAAcauGCUCACUCAa -3'
miRNA:   3'- gCGUA---------GUGGUGGUUGUU---UGGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 50595 0.67 0.916413
Target:  5'- cCGUuaCGCUACCAACAccGACuuuuauguuCCACCCAa -3'
miRNA:   3'- -GCGuaGUGGUGGUUGU--UUG---------GGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 53051 0.66 0.947686
Target:  5'- gGUGUCAuCCACC-ACAggUgCAUCCAg -3'
miRNA:   3'- gCGUAGU-GGUGGuUGUuuGgGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 54903 0.68 0.890471
Target:  5'- ----aCACCaacGCCAACAAcgGCUCGCCCAc -3'
miRNA:   3'- gcguaGUGG---UGGUUGUU--UGGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 55601 0.82 0.21358
Target:  5'- aCGCAUCACCACCGGCAcacaugaucccAACCgGCUCGu -3'
miRNA:   3'- -GCGUAGUGGUGGUUGU-----------UUGGgUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 56918 0.66 0.952011
Target:  5'- -aCAUCACCACUAcuacuaccacuaGCAAGCgCCACUg- -3'
miRNA:   3'- gcGUAGUGGUGGU------------UGUUUG-GGUGGgu -5'
11197 5' -53.3 NC_002816.1 + 57189 0.72 0.676895
Target:  5'- gCGUAUCACCACCAcccaauuguggaacACAGugCaCGCCUc -3'
miRNA:   3'- -GCGUAGUGGUGGU--------------UGUUugG-GUGGGu -5'
11197 5' -53.3 NC_002816.1 + 57835 0.66 0.938283
Target:  5'- ----aCACCACCGACAAACUCGgCgAa -3'
miRNA:   3'- gcguaGUGGUGGUUGUUUGGGUgGgU- -5'
11197 5' -53.3 NC_002816.1 + 59402 0.66 0.9332
Target:  5'- uGCGUCGCC-CUgaaaAACAugauuGCCCACUCu -3'
miRNA:   3'- gCGUAGUGGuGG----UUGUu----UGGGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 60172 0.66 0.943111
Target:  5'- gGUAUCAUUGCCGACAucAACuCCucCCCGc -3'
miRNA:   3'- gCGUAGUGGUGGUUGU--UUG-GGu-GGGU- -5'
11197 5' -53.3 NC_002816.1 + 60883 0.74 0.57437
Target:  5'- aCGCGcgCACCuCCAACAAcACCUGCCCu -3'
miRNA:   3'- -GCGUa-GUGGuGGUUGUU-UGGGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 64569 0.8 0.302128
Target:  5'- aGCcguUCcguCCGCCAACGAGCUCACCCAg -3'
miRNA:   3'- gCGu--AGu--GGUGGUUGUUUGGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 64935 0.79 0.32444
Target:  5'- aCGCuacgCACCACCcuACAAACCCACCa- -3'
miRNA:   3'- -GCGua--GUGGUGGu-UGUUUGGGUGGgu -5'
11197 5' -53.3 NC_002816.1 + 67232 0.7 0.809421
Target:  5'- aCGCAgCACCACCAACGuugUCCGCaUCAc -3'
miRNA:   3'- -GCGUaGUGGUGGUUGUuu-GGGUG-GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.