miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11199 5' -46.7 NC_002816.1 + 81905 1.1 0.014693
Target:  5'- aAAAACUCAAUGUUGGACGGCAACACCc -3'
miRNA:   3'- -UUUUGAGUUACAACCUGCCGUUGUGG- -5'
11199 5' -46.7 NC_002816.1 + 17316 0.76 0.861086
Target:  5'- -cAGCUCAuaaacaAUGgUGG-CGGCGGCACCg -3'
miRNA:   3'- uuUUGAGU------UACaACCuGCCGUUGUGG- -5'
11199 5' -46.7 NC_002816.1 + 93050 0.74 0.906402
Target:  5'- --cGCUCAuUG-UGGuACGGCAACACa -3'
miRNA:   3'- uuuUGAGUuACaACC-UGCCGUUGUGg -5'
11199 5' -46.7 NC_002816.1 + 17611 0.73 0.941724
Target:  5'- uGAGugUCGAUGUUGG-UGGUGAgauCACCa -3'
miRNA:   3'- -UUUugAGUUACAACCuGCCGUU---GUGG- -5'
11199 5' -46.7 NC_002816.1 + 41357 0.73 0.946618
Target:  5'- -cAGCUCGGcGUUGGGCGuauuccGUAGCACCc -3'
miRNA:   3'- uuUUGAGUUaCAACCUGC------CGUUGUGG- -5'
11199 5' -46.7 NC_002816.1 + 8361 0.72 0.963449
Target:  5'- -cGGCUC-GUGUUGGGCuuuCAGCACCa -3'
miRNA:   3'- uuUUGAGuUACAACCUGcc-GUUGUGG- -5'
11199 5' -46.7 NC_002816.1 + 107853 0.72 0.969976
Target:  5'- -cGAUaaGAUGUUGGACGGCAuugauucGCGCa -3'
miRNA:   3'- uuUUGagUUACAACCUGCCGU-------UGUGg -5'
11199 5' -46.7 NC_002816.1 + 75762 0.71 0.976169
Target:  5'- --cACUUGAUGUgucUGGugGGCGACGa- -3'
miRNA:   3'- uuuUGAGUUACA---ACCugCCGUUGUgg -5'
11199 5' -46.7 NC_002816.1 + 77811 0.71 0.982039
Target:  5'- --cGCUCAA-GUUGGACGGUGugcguggcaaagcguACAUCg -3'
miRNA:   3'- uuuUGAGUUaCAACCUGCCGU---------------UGUGG- -5'
11199 5' -46.7 NC_002816.1 + 99956 0.7 0.987094
Target:  5'- --cGCUCAuc-UUGGGCGGUauaaucucguuGACACCg -3'
miRNA:   3'- uuuUGAGUuacAACCUGCCG-----------UUGUGG- -5'
11199 5' -46.7 NC_002816.1 + 32722 0.7 0.988715
Target:  5'- -cAGCUCGuUGgggUGGAcacgcacggcCGGCAACGCUa -3'
miRNA:   3'- uuUUGAGUuACa--ACCU----------GCCGUUGUGG- -5'
11199 5' -46.7 NC_002816.1 + 37191 0.69 0.993679
Target:  5'- ---gUUUggUGUggUGGACgGGCGACACUu -3'
miRNA:   3'- uuuuGAGuuACA--ACCUG-CCGUUGUGG- -5'
11199 5' -46.7 NC_002816.1 + 59078 0.69 0.994594
Target:  5'- --uGC-CGAUGUUGuucuuuGAgGGCGGCGCCa -3'
miRNA:   3'- uuuUGaGUUACAAC------CUgCCGUUGUGG- -5'
11199 5' -46.7 NC_002816.1 + 17712 0.69 0.995398
Target:  5'- ---uCUCAAUGUUGGGCaGaGCGuuaACCa -3'
miRNA:   3'- uuuuGAGUUACAACCUG-C-CGUug-UGG- -5'
11199 5' -46.7 NC_002816.1 + 41524 0.69 0.995398
Target:  5'- aGAAACUCAGUGcacaaUUGGAUaGCAGucgauCGCCg -3'
miRNA:   3'- -UUUUGAGUUAC-----AACCUGcCGUU-----GUGG- -5'
11199 5' -46.7 NC_002816.1 + 12669 0.68 0.996102
Target:  5'- -cGACUUggUGgUGca-GGCAACACCg -3'
miRNA:   3'- uuUUGAGuuACaACcugCCGUUGUGG- -5'
11199 5' -46.7 NC_002816.1 + 2411 0.68 0.996715
Target:  5'- cAAACUCAuuagGUUGG-CGG-AGCACUa -3'
miRNA:   3'- uUUUGAGUua--CAACCuGCCgUUGUGG- -5'
11199 5' -46.7 NC_002816.1 + 110582 0.68 0.997247
Target:  5'- cAGAGCUUAGga--GGugGGCGACGgCg -3'
miRNA:   3'- -UUUUGAGUUacaaCCugCCGUUGUgG- -5'
11199 5' -46.7 NC_002816.1 + 82006 0.68 0.997247
Target:  5'- ---uUUCAAgggGUUGGACguGGC-GCGCCa -3'
miRNA:   3'- uuuuGAGUUa--CAACCUG--CCGuUGUGG- -5'
11199 5' -46.7 NC_002816.1 + 35682 0.68 0.998097
Target:  5'- ---cCUCGGUGaUGGAUGGCuGCAaauCCu -3'
miRNA:   3'- uuuuGAGUUACaACCUGCCGuUGU---GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.