Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11199 | 5' | -46.7 | NC_002816.1 | + | 2411 | 0.68 | 0.996715 |
Target: 5'- cAAACUCAuuagGUUGG-CGG-AGCACUa -3' miRNA: 3'- uUUUGAGUua--CAACCuGCCgUUGUGG- -5' |
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11199 | 5' | -46.7 | NC_002816.1 | + | 8361 | 0.72 | 0.963449 |
Target: 5'- -cGGCUC-GUGUUGGGCuuuCAGCACCa -3' miRNA: 3'- uuUUGAGuUACAACCUGcc-GUUGUGG- -5' |
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11199 | 5' | -46.7 | NC_002816.1 | + | 11252 | 0.67 | 0.999153 |
Target: 5'- ---uCUCAGUGU---GCGGC-GCACCg -3' miRNA: 3'- uuuuGAGUUACAaccUGCCGuUGUGG- -5' |
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11199 | 5' | -46.7 | NC_002816.1 | + | 12669 | 0.68 | 0.996102 |
Target: 5'- -cGACUUggUGgUGca-GGCAACACCg -3' miRNA: 3'- uuUUGAGuuACaACcugCCGUUGUGG- -5' |
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11199 | 5' | -46.7 | NC_002816.1 | + | 17316 | 0.76 | 0.861086 |
Target: 5'- -cAGCUCAuaaacaAUGgUGG-CGGCGGCACCg -3' miRNA: 3'- uuUUGAGU------UACaACCuGCCGUUGUGG- -5' |
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11199 | 5' | -46.7 | NC_002816.1 | + | 17611 | 0.73 | 0.941724 |
Target: 5'- uGAGugUCGAUGUUGG-UGGUGAgauCACCa -3' miRNA: 3'- -UUUugAGUUACAACCuGCCGUU---GUGG- -5' |
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11199 | 5' | -46.7 | NC_002816.1 | + | 17712 | 0.69 | 0.995398 |
Target: 5'- ---uCUCAAUGUUGGGCaGaGCGuuaACCa -3' miRNA: 3'- uuuuGAGUUACAACCUG-C-CGUug-UGG- -5' |
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11199 | 5' | -46.7 | NC_002816.1 | + | 31793 | 0.67 | 0.998954 |
Target: 5'- --uGCUCAGcaacgcgaGGAcaaCGGCAACACCa -3' miRNA: 3'- uuuUGAGUUacaa----CCU---GCCGUUGUGG- -5' |
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11199 | 5' | -46.7 | NC_002816.1 | + | 32254 | 0.67 | 0.999319 |
Target: 5'- ------gGGUGUgUGGugGGCAcuACGCCu -3' miRNA: 3'- uuuugagUUACA-ACCugCCGU--UGUGG- -5' |
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11199 | 5' | -46.7 | NC_002816.1 | + | 32722 | 0.7 | 0.988715 |
Target: 5'- -cAGCUCGuUGgggUGGAcacgcacggcCGGCAACGCUa -3' miRNA: 3'- uuUUGAGUuACa--ACCU----------GCCGUUGUGG- -5' |
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11199 | 5' | -46.7 | NC_002816.1 | + | 35682 | 0.68 | 0.998097 |
Target: 5'- ---cCUCGGUGaUGGAUGGCuGCAaauCCu -3' miRNA: 3'- uuuuGAGUUACaACCUGCCGuUGU---GG- -5' |
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11199 | 5' | -46.7 | NC_002816.1 | + | 37191 | 0.69 | 0.993679 |
Target: 5'- ---gUUUggUGUggUGGACgGGCGACACUu -3' miRNA: 3'- uuuuGAGuuACA--ACCUG-CCGUUGUGG- -5' |
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11199 | 5' | -46.7 | NC_002816.1 | + | 41357 | 0.73 | 0.946618 |
Target: 5'- -cAGCUCGGcGUUGGGCGuauuccGUAGCACCc -3' miRNA: 3'- uuUUGAGUUaCAACCUGC------CGUUGUGG- -5' |
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11199 | 5' | -46.7 | NC_002816.1 | + | 41524 | 0.69 | 0.995398 |
Target: 5'- aGAAACUCAGUGcacaaUUGGAUaGCAGucgauCGCCg -3' miRNA: 3'- -UUUUGAGUUAC-----AACCUGcCGUU-----GUGG- -5' |
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11199 | 5' | -46.7 | NC_002816.1 | + | 46456 | 0.67 | 0.999319 |
Target: 5'- gAAGGgUCGcgGguuuUUGGugGGCAuguugauggGCACCg -3' miRNA: 3'- -UUUUgAGUuaC----AACCugCCGU---------UGUGG- -5' |
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11199 | 5' | -46.7 | NC_002816.1 | + | 59078 | 0.69 | 0.994594 |
Target: 5'- --uGC-CGAUGUUGuucuuuGAgGGCGGCGCCa -3' miRNA: 3'- uuuUGaGUUACAAC------CUgCCGUUGUGG- -5' |
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11199 | 5' | -46.7 | NC_002816.1 | + | 61845 | 0.67 | 0.998954 |
Target: 5'- ----gUCAGUuuuaaGGAgGGCGACACCa -3' miRNA: 3'- uuuugAGUUAcaa--CCUgCCGUUGUGG- -5' |
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11199 | 5' | -46.7 | NC_002816.1 | + | 64421 | 0.66 | 0.999456 |
Target: 5'- uGAGCUCGuUGgcGGACGGaacggcuuggguCGACACg -3' miRNA: 3'- uUUUGAGUuACaaCCUGCC------------GUUGUGg -5' |
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11199 | 5' | -46.7 | NC_002816.1 | + | 75272 | 0.66 | 0.999569 |
Target: 5'- gGAAACuauugUCAAaaucacguguUGUUGGACGcGUuACACCu -3' miRNA: 3'- -UUUUG-----AGUU----------ACAACCUGC-CGuUGUGG- -5' |
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11199 | 5' | -46.7 | NC_002816.1 | + | 75762 | 0.71 | 0.976169 |
Target: 5'- --cACUUGAUGUgucUGGugGGCGACGa- -3' miRNA: 3'- uuuUGAGUUACA---ACCugCCGUUGUgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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