miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11199 5' -46.7 NC_002816.1 + 77202 0.66 0.999661
Target:  5'- uGAGUUUAGuUGUgUGGACGGCGGCGgCg -3'
miRNA:   3'- uUUUGAGUU-ACA-ACCUGCCGUUGUgG- -5'
11199 5' -46.7 NC_002816.1 + 77811 0.71 0.982039
Target:  5'- --cGCUCAA-GUUGGACGGUGugcguggcaaagcguACAUCg -3'
miRNA:   3'- uuuUGAGUUaCAACCUGCCGU---------------UGUGG- -5'
11199 5' -46.7 NC_002816.1 + 81905 1.1 0.014693
Target:  5'- aAAAACUCAAUGUUGGACGGCAACACCc -3'
miRNA:   3'- -UUUUGAGUUACAACCUGCCGUUGUGG- -5'
11199 5' -46.7 NC_002816.1 + 82006 0.68 0.997247
Target:  5'- ---uUUCAAgggGUUGGACguGGC-GCGCCa -3'
miRNA:   3'- uuuuGAGUUa--CAACCUG--CCGuUGUGG- -5'
11199 5' -46.7 NC_002816.1 + 82490 0.67 0.998932
Target:  5'- gGAGAUUacGUGccGGACGGCGcacacagACACCg -3'
miRNA:   3'- -UUUUGAguUACaaCCUGCCGU-------UGUGG- -5'
11199 5' -46.7 NC_002816.1 + 91935 0.66 0.999735
Target:  5'- uGAAGCUgGAgg-UGGuguACGGUGACACUg -3'
miRNA:   3'- -UUUUGAgUUacaACC---UGCCGUUGUGG- -5'
11199 5' -46.7 NC_002816.1 + 93050 0.74 0.906402
Target:  5'- --cGCUCAuUG-UGGuACGGCAACACa -3'
miRNA:   3'- uuuUGAGUuACaACC-UGCCGUUGUGg -5'
11199 5' -46.7 NC_002816.1 + 93576 0.67 0.998432
Target:  5'- --uGC-CAuguUGUUGGACGGUuuuGCACg -3'
miRNA:   3'- uuuUGaGUu--ACAACCUGCCGu--UGUGg -5'
11199 5' -46.7 NC_002816.1 + 99956 0.7 0.987094
Target:  5'- --cGCUCAuc-UUGGGCGGUauaaucucguuGACACCg -3'
miRNA:   3'- uuuUGAGUuacAACCUGCCG-----------UUGUGG- -5'
11199 5' -46.7 NC_002816.1 + 100362 0.66 0.999456
Target:  5'- uGGGC-CAGUGUUGuauuGCGGUgcaAACACCa -3'
miRNA:   3'- uUUUGaGUUACAACc---UGCCG---UUGUGG- -5'
11199 5' -46.7 NC_002816.1 + 101362 0.67 0.998432
Target:  5'- --cGCUCAcuauucaacaccAUGUUGGAUgagGGaGACACCg -3'
miRNA:   3'- uuuUGAGU------------UACAACCUG---CCgUUGUGG- -5'
11199 5' -46.7 NC_002816.1 + 106423 0.66 0.999661
Target:  5'- gGAGAUUUuacaGUUGGAggaGGCGACACg -3'
miRNA:   3'- -UUUUGAGuua-CAACCUg--CCGUUGUGg -5'
11199 5' -46.7 NC_002816.1 + 107853 0.72 0.969976
Target:  5'- -cGAUaaGAUGUUGGACGGCAuugauucGCGCa -3'
miRNA:   3'- uuUUGagUUACAACCUGCCGU-------UGUGg -5'
11199 5' -46.7 NC_002816.1 + 110582 0.68 0.997247
Target:  5'- cAGAGCUUAGga--GGugGGCGACGgCg -3'
miRNA:   3'- -UUUUGAGUUacaaCCugCCGUUGUgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.