miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11202 5' -49.7 NC_002816.1 + 45709 0.66 0.995803
Target:  5'- gACACAuacuUGAUCaccugCGCCGUCUugaACGcCGUg -3'
miRNA:   3'- -UGUGUu---AUUAGa----GUGGCAGG---UGC-GCG- -5'
11202 5' -49.7 NC_002816.1 + 27199 0.66 0.995803
Target:  5'- aACACGuuauGUGgcGUgUUugUGUCCGCGuCGCg -3'
miRNA:   3'- -UGUGU----UAU--UAgAGugGCAGGUGC-GCG- -5'
11202 5' -49.7 NC_002816.1 + 6281 0.66 0.995083
Target:  5'- uACACAcgu-UC-CGCCGUCUuucuguACGCGUa -3'
miRNA:   3'- -UGUGUuauuAGaGUGGCAGG------UGCGCG- -5'
11202 5' -49.7 NC_002816.1 + 83103 0.66 0.994928
Target:  5'- uCACucaccgcCUCACCGUCCAuaaacuuuuuCGCGUc -3'
miRNA:   3'- uGUGuuauua-GAGUGGCAGGU----------GCGCG- -5'
11202 5' -49.7 NC_002816.1 + 68444 0.66 0.994
Target:  5'- uACACAAU-AUCUgACaaaugacacugcuuCGUcgcCCGCGCGCa -3'
miRNA:   3'- -UGUGUUAuUAGAgUG--------------GCA---GGUGCGCG- -5'
11202 5' -49.7 NC_002816.1 + 107690 0.66 0.993342
Target:  5'- uCACGAUucagCUUggugggugCGUCCACGCGCu -3'
miRNA:   3'- uGUGUUAuua-GAGug------GCAGGUGCGCG- -5'
11202 5' -49.7 NC_002816.1 + 77648 0.67 0.992303
Target:  5'- uCACGAUGuacgCUuugccacgcaCACCGUCCAacuugaGCGCc -3'
miRNA:   3'- uGUGUUAUua--GA----------GUGGCAGGUg-----CGCG- -5'
11202 5' -49.7 NC_002816.1 + 59137 0.67 0.992303
Target:  5'- aACGCGA-AAUCgcCACCGUUUACcCGCa -3'
miRNA:   3'- -UGUGUUaUUAGa-GUGGCAGGUGcGCG- -5'
11202 5' -49.7 NC_002816.1 + 104902 0.67 0.99162
Target:  5'- aAUAUAA-GGUCgUCGCCGUcgaugaacgcguugcCCAUGCGCa -3'
miRNA:   3'- -UGUGUUaUUAG-AGUGGCA---------------GGUGCGCG- -5'
11202 5' -49.7 NC_002816.1 + 101289 0.67 0.989841
Target:  5'- aGCGCGAccgauGUCUCGCCa-UCACGcCGCg -3'
miRNA:   3'- -UGUGUUau---UAGAGUGGcaGGUGC-GCG- -5'
11202 5' -49.7 NC_002816.1 + 4310 0.68 0.985041
Target:  5'- cGCGCA--GAcgUCACCGagUCCACGUGUu -3'
miRNA:   3'- -UGUGUuaUUagAGUGGC--AGGUGCGCG- -5'
11202 5' -49.7 NC_002816.1 + 102047 0.68 0.983107
Target:  5'- cACAUAAUuguGUgaCACCucguuccacGUCCACGCGUu -3'
miRNA:   3'- -UGUGUUAu--UAgaGUGG---------CAGGUGCGCG- -5'
11202 5' -49.7 NC_002816.1 + 73057 0.68 0.978681
Target:  5'- uACAUAu---UCUCGCCGggCugGUGCa -3'
miRNA:   3'- -UGUGUuauuAGAGUGGCagGugCGCG- -5'
11202 5' -49.7 NC_002816.1 + 121013 0.68 0.978681
Target:  5'- uGCACAgcAUGGgcacCcCGCCGUCCAC-CGCc -3'
miRNA:   3'- -UGUGU--UAUUa---GaGUGGCAGGUGcGCG- -5'
11202 5' -49.7 NC_002816.1 + 25862 0.68 0.978681
Target:  5'- uGCAUAGUGAgCUggacgcCGCCGUaaauugUCACGCGCu -3'
miRNA:   3'- -UGUGUUAUUaGA------GUGGCA------GGUGCGCG- -5'
11202 5' -49.7 NC_002816.1 + 19361 0.69 0.960308
Target:  5'- cCACAAacucguuguaguUGcgCUCgGCCGUCUggACGCGCg -3'
miRNA:   3'- uGUGUU------------AUuaGAG-UGGCAGG--UGCGCG- -5'
11202 5' -49.7 NC_002816.1 + 51666 0.69 0.960308
Target:  5'- aGCGUGAUGAUCacCACCGUCUugGCa- -3'
miRNA:   3'- -UGUGUUAUUAGa-GUGGCAGGugCGcg -5'
11202 5' -49.7 NC_002816.1 + 76598 0.69 0.960308
Target:  5'- aACACucaacuUGAUCUCcCCGUCCAC-UGUa -3'
miRNA:   3'- -UGUGuu----AUUAGAGuGGCAGGUGcGCG- -5'
11202 5' -49.7 NC_002816.1 + 52339 0.7 0.947899
Target:  5'- uGCACAGUGAcucgaCUCACCGaCCACaccguaCGCg -3'
miRNA:   3'- -UGUGUUAUUa----GAGUGGCaGGUGc-----GCG- -5'
11202 5' -49.7 NC_002816.1 + 33843 0.71 0.922011
Target:  5'- aACACGAUcuauauUCUaUGCCGUCaCACGCGUu -3'
miRNA:   3'- -UGUGUUAuu----AGA-GUGGCAG-GUGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.