Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11202 | 5' | -49.7 | NC_002816.1 | + | 45709 | 0.66 | 0.995803 |
Target: 5'- gACACAuacuUGAUCaccugCGCCGUCUugaACGcCGUg -3' miRNA: 3'- -UGUGUu---AUUAGa----GUGGCAGG---UGC-GCG- -5' |
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11202 | 5' | -49.7 | NC_002816.1 | + | 27199 | 0.66 | 0.995803 |
Target: 5'- aACACGuuauGUGgcGUgUUugUGUCCGCGuCGCg -3' miRNA: 3'- -UGUGU----UAU--UAgAGugGCAGGUGC-GCG- -5' |
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11202 | 5' | -49.7 | NC_002816.1 | + | 6281 | 0.66 | 0.995083 |
Target: 5'- uACACAcgu-UC-CGCCGUCUuucuguACGCGUa -3' miRNA: 3'- -UGUGUuauuAGaGUGGCAGG------UGCGCG- -5' |
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11202 | 5' | -49.7 | NC_002816.1 | + | 83103 | 0.66 | 0.994928 |
Target: 5'- uCACucaccgcCUCACCGUCCAuaaacuuuuuCGCGUc -3' miRNA: 3'- uGUGuuauua-GAGUGGCAGGU----------GCGCG- -5' |
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11202 | 5' | -49.7 | NC_002816.1 | + | 68444 | 0.66 | 0.994 |
Target: 5'- uACACAAU-AUCUgACaaaugacacugcuuCGUcgcCCGCGCGCa -3' miRNA: 3'- -UGUGUUAuUAGAgUG--------------GCA---GGUGCGCG- -5' |
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11202 | 5' | -49.7 | NC_002816.1 | + | 107690 | 0.66 | 0.993342 |
Target: 5'- uCACGAUucagCUUggugggugCGUCCACGCGCu -3' miRNA: 3'- uGUGUUAuua-GAGug------GCAGGUGCGCG- -5' |
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11202 | 5' | -49.7 | NC_002816.1 | + | 77648 | 0.67 | 0.992303 |
Target: 5'- uCACGAUGuacgCUuugccacgcaCACCGUCCAacuugaGCGCc -3' miRNA: 3'- uGUGUUAUua--GA----------GUGGCAGGUg-----CGCG- -5' |
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11202 | 5' | -49.7 | NC_002816.1 | + | 59137 | 0.67 | 0.992303 |
Target: 5'- aACGCGA-AAUCgcCACCGUUUACcCGCa -3' miRNA: 3'- -UGUGUUaUUAGa-GUGGCAGGUGcGCG- -5' |
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11202 | 5' | -49.7 | NC_002816.1 | + | 104902 | 0.67 | 0.99162 |
Target: 5'- aAUAUAA-GGUCgUCGCCGUcgaugaacgcguugcCCAUGCGCa -3' miRNA: 3'- -UGUGUUaUUAG-AGUGGCA---------------GGUGCGCG- -5' |
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11202 | 5' | -49.7 | NC_002816.1 | + | 101289 | 0.67 | 0.989841 |
Target: 5'- aGCGCGAccgauGUCUCGCCa-UCACGcCGCg -3' miRNA: 3'- -UGUGUUau---UAGAGUGGcaGGUGC-GCG- -5' |
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11202 | 5' | -49.7 | NC_002816.1 | + | 4310 | 0.68 | 0.985041 |
Target: 5'- cGCGCA--GAcgUCACCGagUCCACGUGUu -3' miRNA: 3'- -UGUGUuaUUagAGUGGC--AGGUGCGCG- -5' |
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11202 | 5' | -49.7 | NC_002816.1 | + | 102047 | 0.68 | 0.983107 |
Target: 5'- cACAUAAUuguGUgaCACCucguuccacGUCCACGCGUu -3' miRNA: 3'- -UGUGUUAu--UAgaGUGG---------CAGGUGCGCG- -5' |
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11202 | 5' | -49.7 | NC_002816.1 | + | 73057 | 0.68 | 0.978681 |
Target: 5'- uACAUAu---UCUCGCCGggCugGUGCa -3' miRNA: 3'- -UGUGUuauuAGAGUGGCagGugCGCG- -5' |
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11202 | 5' | -49.7 | NC_002816.1 | + | 121013 | 0.68 | 0.978681 |
Target: 5'- uGCACAgcAUGGgcacCcCGCCGUCCAC-CGCc -3' miRNA: 3'- -UGUGU--UAUUa---GaGUGGCAGGUGcGCG- -5' |
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11202 | 5' | -49.7 | NC_002816.1 | + | 25862 | 0.68 | 0.978681 |
Target: 5'- uGCAUAGUGAgCUggacgcCGCCGUaaauugUCACGCGCu -3' miRNA: 3'- -UGUGUUAUUaGA------GUGGCA------GGUGCGCG- -5' |
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11202 | 5' | -49.7 | NC_002816.1 | + | 19361 | 0.69 | 0.960308 |
Target: 5'- cCACAAacucguuguaguUGcgCUCgGCCGUCUggACGCGCg -3' miRNA: 3'- uGUGUU------------AUuaGAG-UGGCAGG--UGCGCG- -5' |
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11202 | 5' | -49.7 | NC_002816.1 | + | 51666 | 0.69 | 0.960308 |
Target: 5'- aGCGUGAUGAUCacCACCGUCUugGCa- -3' miRNA: 3'- -UGUGUUAUUAGa-GUGGCAGGugCGcg -5' |
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11202 | 5' | -49.7 | NC_002816.1 | + | 76598 | 0.69 | 0.960308 |
Target: 5'- aACACucaacuUGAUCUCcCCGUCCAC-UGUa -3' miRNA: 3'- -UGUGuu----AUUAGAGuGGCAGGUGcGCG- -5' |
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11202 | 5' | -49.7 | NC_002816.1 | + | 52339 | 0.7 | 0.947899 |
Target: 5'- uGCACAGUGAcucgaCUCACCGaCCACaccguaCGCg -3' miRNA: 3'- -UGUGUUAUUa----GAGUGGCaGGUGc-----GCG- -5' |
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11202 | 5' | -49.7 | NC_002816.1 | + | 33843 | 0.71 | 0.922011 |
Target: 5'- aACACGAUcuauauUCUaUGCCGUCaCACGCGUu -3' miRNA: 3'- -UGUGUUAuu----AGA-GUGGCAG-GUGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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