Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11282 | 3' | -50.4 | NC_003083.1 | + | 1809 | 0.73 | 0.746407 |
Target: 5'- --aGCGUUGACCAccugccgucgucgGUGca-CGCCGGCg -3' miRNA: 3'- aaaCGCAACUGGU-------------UAUaucGCGGCCG- -5' |
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11282 | 3' | -50.4 | NC_003083.1 | + | 18332 | 0.79 | 0.439911 |
Target: 5'- --cGCGUUGACaac---AGCGCCGGCg -3' miRNA: 3'- aaaCGCAACUGguuauaUCGCGGCCG- -5' |
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11282 | 3' | -50.4 | NC_003083.1 | + | 22905 | 0.73 | 0.757746 |
Target: 5'- cUUGUGuUUGACCAAUAcccGGCGuuGGUc -3' miRNA: 3'- aAACGC-AACUGGUUAUa--UCGCggCCG- -5' |
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11282 | 3' | -50.4 | NC_003083.1 | + | 23057 | 0.68 | 0.961877 |
Target: 5'- --cGUGUUGACCAA-----CGCCGGg -3' miRNA: 3'- aaaCGCAACUGGUUauaucGCGGCCg -5' |
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11282 | 3' | -50.4 | NC_003083.1 | + | 27057 | 0.7 | 0.898163 |
Target: 5'- -cUGCGUUGGcgguguCCAAguu-GCGCaCGGCa -3' miRNA: 3'- aaACGCAACU------GGUUauauCGCG-GCCG- -5' |
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11282 | 3' | -50.4 | NC_003083.1 | + | 32259 | 0.71 | 0.876181 |
Target: 5'- aUUGUGUUGACgug-GUGGUGCUGGg -3' miRNA: 3'- aAACGCAACUGguuaUAUCGCGGCCg -5' |
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11282 | 3' | -50.4 | NC_003083.1 | + | 32333 | 1.11 | 0.004903 |
Target: 5'- cUUUGCGUUGACCAAUAUAGCGCCGGCa -3' miRNA: 3'- -AAACGCAACUGGUUAUAUCGCGGCCG- -5' |
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11282 | 3' | -50.4 | NC_003083.1 | + | 35987 | 0.69 | 0.938545 |
Target: 5'- gUUGCGUUGAUUAuuaagAGCGCaacacauguacgauCGGCg -3' miRNA: 3'- aAACGCAACUGGUuaua-UCGCG--------------GCCG- -5' |
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11282 | 3' | -50.4 | NC_003083.1 | + | 38899 | 0.68 | 0.958037 |
Target: 5'- --cGCGc-GAUUAAUgcgcuGUAGCGCCGGUc -3' miRNA: 3'- aaaCGCaaCUGGUUA-----UAUCGCGGCCG- -5' |
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11282 | 3' | -50.4 | NC_003083.1 | + | 39228 | 0.7 | 0.888195 |
Target: 5'- gUUGCGggcuuuaaaacGCCGGUucaaaAGCGCCGGCg -3' miRNA: 3'- aAACGCaac--------UGGUUAua---UCGCGGCCG- -5' |
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11282 | 3' | -50.4 | NC_003083.1 | + | 59610 | 0.67 | 0.974795 |
Target: 5'- --gGUGUUGGCgcgCGAUGUgGGCGCCgucgGGCu -3' miRNA: 3'- aaaCGCAACUG---GUUAUA-UCGCGG----CCG- -5' |
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11282 | 3' | -50.4 | NC_003083.1 | + | 61619 | 0.66 | 0.98339 |
Target: 5'- -gUGCGUUauuagGACCGGcuucugcgacgGGCGCUGGUg -3' miRNA: 3'- aaACGCAA-----CUGGUUaua--------UCGCGGCCG- -5' |
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11282 | 3' | -50.4 | NC_003083.1 | + | 64308 | 0.74 | 0.725446 |
Target: 5'- --gGUGUUGGCCAaaGUGUuggagaaGGCGuuGGCg -3' miRNA: 3'- aaaCGCAACUGGU--UAUA-------UCGCggCCG- -5' |
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11282 | 3' | -50.4 | NC_003083.1 | + | 64344 | 0.74 | 0.725446 |
Target: 5'- --gGUGUUGGCCAuaGUGUuggcgacGGCGuuGGCg -3' miRNA: 3'- aaaCGCAACUGGU--UAUA-------UCGCggCCG- -5' |
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11282 | 3' | -50.4 | NC_003083.1 | + | 64410 | 0.7 | 0.891095 |
Target: 5'- --gGCGUUGGCgaCGGUGuUGGCGaCGGCg -3' miRNA: 3'- aaaCGCAACUG--GUUAU-AUCGCgGCCG- -5' |
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11282 | 3' | -50.4 | NC_003083.1 | + | 64506 | 0.67 | 0.968486 |
Target: 5'- --gGCGUUGGCgAAgggGUuggcgaugguggaGGCGuuGGCg -3' miRNA: 3'- aaaCGCAACUGgUUa--UA-------------UCGCggCCG- -5' |
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11282 | 3' | -50.4 | NC_003083.1 | + | 68288 | 0.76 | 0.607013 |
Target: 5'- cUUGCa--GGCCGAguuuuUAGCGCCGGCu -3' miRNA: 3'- aAACGcaaCUGGUUau---AUCGCGGCCG- -5' |
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11282 | 3' | -50.4 | NC_003083.1 | + | 73658 | 0.66 | 0.987743 |
Target: 5'- --gGCGUUGuugCAAcg-GGCGCgGGCg -3' miRNA: 3'- aaaCGCAACug-GUUauaUCGCGgCCG- -5' |
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11282 | 3' | -50.4 | NC_003083.1 | + | 78992 | 0.73 | 0.777955 |
Target: 5'- --aGUGUUuaGAUUAAUuucguUAGCGCCGGCa -3' miRNA: 3'- aaaCGCAA--CUGGUUAu----AUCGCGGCCG- -5' |
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11282 | 3' | -50.4 | NC_003083.1 | + | 88047 | 0.74 | 0.737026 |
Target: 5'- -gUGCGUguugacgcgagacggGGCCAAUAUAaaaauuuggagccGCGCCGGUc -3' miRNA: 3'- aaACGCAa--------------CUGGUUAUAU-------------CGCGGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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