Results 21 - 24 of 24 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11282 | 3' | -50.4 | NC_003083.1 | + | 64344 | 0.74 | 0.725446 |
Target: 5'- --gGUGUUGGCCAuaGUGUuggcgacGGCGuuGGCg -3' miRNA: 3'- aaaCGCAACUGGU--UAUA-------UCGCggCCG- -5' |
|||||||
11282 | 3' | -50.4 | NC_003083.1 | + | 68288 | 0.76 | 0.607013 |
Target: 5'- cUUGCa--GGCCGAguuuuUAGCGCCGGCu -3' miRNA: 3'- aAACGcaaCUGGUUau---AUCGCGGCCG- -5' |
|||||||
11282 | 3' | -50.4 | NC_003083.1 | + | 18332 | 0.79 | 0.439911 |
Target: 5'- --cGCGUUGACaac---AGCGCCGGCg -3' miRNA: 3'- aaaCGCAACUGguuauaUCGCGGCCG- -5' |
|||||||
11282 | 3' | -50.4 | NC_003083.1 | + | 32333 | 1.11 | 0.004903 |
Target: 5'- cUUUGCGUUGACCAAUAUAGCGCCGGCa -3' miRNA: 3'- -AAACGCAACUGGUUAUAUCGCGGCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home