miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11283 3' -53 NC_003083.1 + 43443 1.09 0.003834
Target:  5'- aCAACACCGUGCGCACAAUCAUGGCCAc -3'
miRNA:   3'- -GUUGUGGCACGCGUGUUAGUACCGGU- -5'
11283 3' -53 NC_003083.1 + 30526 0.79 0.327161
Target:  5'- aCGACACCGccGCGCACA---AUGGCCAu -3'
miRNA:   3'- -GUUGUGGCa-CGCGUGUuagUACCGGU- -5'
11283 3' -53 NC_003083.1 + 102138 0.78 0.342983
Target:  5'- uGGCGCCGUGCGCGCGuuguacGUUAUGGgCGu -3'
miRNA:   3'- gUUGUGGCACGCGUGU------UAGUACCgGU- -5'
11283 3' -53 NC_003083.1 + 41688 0.73 0.592008
Target:  5'- -cACGCagaGUGCGCACGcGUCAUGGUUAc -3'
miRNA:   3'- guUGUGg--CACGCGUGU-UAGUACCGGU- -5'
11283 3' -53 NC_003083.1 + 27951 0.72 0.698815
Target:  5'- -cGCGUCGUGCGCGCucAAUUcgGGCCGc -3'
miRNA:   3'- guUGUGGCACGCGUG--UUAGuaCCGGU- -5'
11283 3' -53 NC_003083.1 + 62798 0.71 0.750523
Target:  5'- aAAUGaCGUGCGCACGcgCGUGGCg- -3'
miRNA:   3'- gUUGUgGCACGCGUGUuaGUACCGgu -5'
11283 3' -53 NC_003083.1 + 64493 0.7 0.760564
Target:  5'- cCAACGCCGU-CGC-CAAcacUAUGGCCAa -3'
miRNA:   3'- -GUUGUGGCAcGCGuGUUa--GUACCGGU- -5'
11283 3' -53 NC_003083.1 + 100752 0.7 0.780261
Target:  5'- -cACGCCGuUGCGCACAugcgCGUGuCCAg -3'
miRNA:   3'- guUGUGGC-ACGCGUGUua--GUACcGGU- -5'
11283 3' -53 NC_003083.1 + 41829 0.7 0.799374
Target:  5'- cCAugACgCGUGCGCACucugCGUGGUUu -3'
miRNA:   3'- -GUugUG-GCACGCGUGuua-GUACCGGu -5'
11283 3' -53 NC_003083.1 + 24053 0.69 0.817823
Target:  5'- ---gACgGUGCGUugGCAAUCGgcuUGGCCAg -3'
miRNA:   3'- guugUGgCACGCG--UGUUAGU---ACCGGU- -5'
11283 3' -53 NC_003083.1 + 102449 0.69 0.826774
Target:  5'- cCAACGCCGUGUuaGCGCA---AUGGCg- -3'
miRNA:   3'- -GUUGUGGCACG--CGUGUuagUACCGgu -5'
11283 3' -53 NC_003083.1 + 43264 0.69 0.835531
Target:  5'- ---uGCCGUGCGCACcAUCGcgacGCCAu -3'
miRNA:   3'- guugUGGCACGCGUGuUAGUac--CGGU- -5'
11283 3' -53 NC_003083.1 + 43302 0.69 0.844084
Target:  5'- cCAugAUUGUGCGCACGGUguUGuugauGCCAu -3'
miRNA:   3'- -GUugUGGCACGCGUGUUAguAC-----CGGU- -5'
11283 3' -53 NC_003083.1 + 105049 0.68 0.868446
Target:  5'- gGGCGUCGUGCGUugGAUguUGuGCCGg -3'
miRNA:   3'- gUUGUGGCACGCGugUUAguAC-CGGU- -5'
11283 3' -53 NC_003083.1 + 100625 0.68 0.868446
Target:  5'- gCAACGgCGUGCGCACugaaCGcUGGCUu -3'
miRNA:   3'- -GUUGUgGCACGCGUGuua-GU-ACCGGu -5'
11283 3' -53 NC_003083.1 + 44724 0.68 0.868446
Target:  5'- aAGCACCaUGCGCAuCAGU--UGGCUAa -3'
miRNA:   3'- gUUGUGGcACGCGU-GUUAguACCGGU- -5'
11283 3' -53 NC_003083.1 + 50917 0.68 0.890711
Target:  5'- gAAUACCGUGCGCugGcu--UGGCg- -3'
miRNA:   3'- gUUGUGGCACGCGugUuaguACCGgu -5'
11283 3' -53 NC_003083.1 + 104947 0.67 0.916894
Target:  5'- aCAugACCGgcgGCGCGUAuguuuaaauuGUUGUGGCCGc -3'
miRNA:   3'- -GUugUGGCa--CGCGUGU----------UAGUACCGGU- -5'
11283 3' -53 NC_003083.1 + 89504 0.67 0.920463
Target:  5'- uGGCACCGUacGCGCACAGgguaacguUCAcguaugacaugacGGCCAg -3'
miRNA:   3'- gUUGUGGCA--CGCGUGUU--------AGUa------------CCGGU- -5'
11283 3' -53 NC_003083.1 + 58289 0.66 0.928426
Target:  5'- aCAGCGCUuaaugagagGUGCGCACGAcgugCAUGugguGCCGu -3'
miRNA:   3'- -GUUGUGG---------CACGCGUGUUa---GUAC----CGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.