miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11286 5' -56.4 NC_003083.1 + 72828 0.66 0.869873
Target:  5'- cGGCGUCGACGgguguacgugcCGuCUCGG-AucGACGUc -3'
miRNA:   3'- -CCGCGGCUGU-----------GC-GAGCCgUuuCUGCG- -5'
11286 5' -56.4 NC_003083.1 + 43536 0.66 0.869873
Target:  5'- uGGCGgCGAUaACGauaaCGGCGAAGAaucgUGCa -3'
miRNA:   3'- -CCGCgGCUG-UGCga--GCCGUUUCU----GCG- -5'
11286 5' -56.4 NC_003083.1 + 84894 0.66 0.867641
Target:  5'- cGGCGuuGGgcuuacugcgcaucUACGCggcCGGCGGAGAuuucguuguCGCa -3'
miRNA:   3'- -CCGCggCU--------------GUGCGa--GCCGUUUCU---------GCG- -5'
11286 5' -56.4 NC_003083.1 + 64565 0.66 0.862359
Target:  5'- aGGCGuuGGCGacgGCgUUGGUAAAGGgGUu -3'
miRNA:   3'- -CCGCggCUGUg--CG-AGCCGUUUCUgCG- -5'
11286 5' -56.4 NC_003083.1 + 94715 0.66 0.862359
Target:  5'- --gGUCGugGCGCUgCGGCGugucaacugccAAGAUGUa -3'
miRNA:   3'- ccgCGGCugUGCGA-GCCGU-----------UUCUGCG- -5'
11286 5' -56.4 NC_003083.1 + 102138 0.66 0.854636
Target:  5'- uGGCGCCGuGCGCGCguuguaCGuuAuGGGCGUu -3'
miRNA:   3'- -CCGCGGC-UGUGCGa-----GCcgUuUCUGCG- -5'
11286 5' -56.4 NC_003083.1 + 37717 0.66 0.84671
Target:  5'- uGGCGC--ACACGUUguccaCGGC--GGACGCu -3'
miRNA:   3'- -CCGCGgcUGUGCGA-----GCCGuuUCUGCG- -5'
11286 5' -56.4 NC_003083.1 + 112345 0.66 0.84671
Target:  5'- cGCGCgauCGACACcgUCGGUGGAG-CGCa -3'
miRNA:   3'- cCGCG---GCUGUGcgAGCCGUUUCuGCG- -5'
11286 5' -56.4 NC_003083.1 + 32315 0.66 0.84671
Target:  5'- aGCGCCGGCAgugUGCguuUCGGCca--GCGCc -3'
miRNA:   3'- cCGCGGCUGU---GCG---AGCCGuuucUGCG- -5'
11286 5' -56.4 NC_003083.1 + 14839 0.67 0.838588
Target:  5'- aGGUGuuGGCaaACGCagCGGCAAuGACa- -3'
miRNA:   3'- -CCGCggCUG--UGCGa-GCCGUUuCUGcg -5'
11286 5' -56.4 NC_003083.1 + 87680 0.67 0.838588
Target:  5'- uGGgGCCGACccgaugcaaACGaagUGGC--GGACGCg -3'
miRNA:   3'- -CCgCGGCUG---------UGCga-GCCGuuUCUGCG- -5'
11286 5' -56.4 NC_003083.1 + 64409 0.67 0.838588
Target:  5'- cGGCGuuGGCgACGgugUUGGCGAcGGCGUu -3'
miRNA:   3'- -CCGCggCUG-UGCg--AGCCGUUuCUGCG- -5'
11286 5' -56.4 NC_003083.1 + 42331 0.67 0.838588
Target:  5'- uGUGCa-GCACGCUCGuGCuuGGAccaCGCg -3'
miRNA:   3'- cCGCGgcUGUGCGAGC-CGuuUCU---GCG- -5'
11286 5' -56.4 NC_003083.1 + 46834 0.67 0.838588
Target:  5'- aGUGCCGACGauuuCUCGGCAAAcGAacuguuauUGCg -3'
miRNA:   3'- cCGCGGCUGUgc--GAGCCGUUU-CU--------GCG- -5'
11286 5' -56.4 NC_003083.1 + 31989 0.67 0.830277
Target:  5'- aGGCGCaacuauggacuaUGACGCGCcgcauUUGGaacAGACGCg -3'
miRNA:   3'- -CCGCG------------GCUGUGCG-----AGCCguuUCUGCG- -5'
11286 5' -56.4 NC_003083.1 + 70763 0.67 0.821785
Target:  5'- cGC-CCGAucaCACGCUUGuGCu-GGACGCc -3'
miRNA:   3'- cCGcGGCU---GUGCGAGC-CGuuUCUGCG- -5'
11286 5' -56.4 NC_003083.1 + 94191 0.67 0.804288
Target:  5'- gGGCGCCuucguCGUGUUUGGC--GGGCGCg -3'
miRNA:   3'- -CCGCGGcu---GUGCGAGCCGuuUCUGCG- -5'
11286 5' -56.4 NC_003083.1 + 114189 0.68 0.776887
Target:  5'- gGGUGCCGGCAUag--GGUAAacGGGCGCu -3'
miRNA:   3'- -CCGCGGCUGUGcgagCCGUU--UCUGCG- -5'
11286 5' -56.4 NC_003083.1 + 81620 0.68 0.776887
Target:  5'- uGCGCUGAuCAUcaGUUUGGCAAGuuauGGCGCu -3'
miRNA:   3'- cCGCGGCU-GUG--CGAGCCGUUU----CUGCG- -5'
11286 5' -56.4 NC_003083.1 + 106804 0.68 0.767481
Target:  5'- aGGCGCCG-CAgGUUUcuuGUuuGAAGACGCg -3'
miRNA:   3'- -CCGCGGCuGUgCGAGc--CG--UUUCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.