miRNA display CGI


Results 1 - 20 of 25 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11288 3' -57 NC_003083.1 + 82618 0.66 0.864965
Target:  5'- cGGACGGCaaACGUucGCGCagCGUUuGCGUCg -3'
miRNA:   3'- -UCUGCCG--UGCA--UGUGg-GCAGcUGCGG- -5'
11288 3' -57 NC_003083.1 + 24144 0.66 0.864965
Target:  5'- cGACGGCGUGUgucAUACUCGcCGcccaacACGCCg -3'
miRNA:   3'- uCUGCCGUGCA---UGUGGGCaGC------UGCGG- -5'
11288 3' -57 NC_003083.1 + 46787 0.66 0.864965
Target:  5'- uAGGCGuuuGCAUGUGCACuCUGUUGGCa-- -3'
miRNA:   3'- -UCUGC---CGUGCAUGUG-GGCAGCUGcgg -5'
11288 3' -57 NC_003083.1 + 8801 0.66 0.864217
Target:  5'- uGGCGGCugGUgauuuaagagaccGCGCCgGguaagUGAUGUCa -3'
miRNA:   3'- uCUGCCGugCA-------------UGUGGgCa----GCUGCGG- -5'
11288 3' -57 NC_003083.1 + 59396 0.66 0.857389
Target:  5'- cGACauGCAUGUGCACaaGUUGACcgguGCCg -3'
miRNA:   3'- uCUGc-CGUGCAUGUGggCAGCUG----CGG- -5'
11288 3' -57 NC_003083.1 + 65668 0.66 0.85662
Target:  5'- cGACGGCACcggGCACaaaaacaaacgcaCCGUUuuguGCGCCa -3'
miRNA:   3'- uCUGCCGUGca-UGUG-------------GGCAGc---UGCGG- -5'
11288 3' -57 NC_003083.1 + 36185 0.66 0.841638
Target:  5'- cGACGcGCA-GUGcCACCCGUaaACGUCa -3'
miRNA:   3'- uCUGC-CGUgCAU-GUGGGCAgcUGCGG- -5'
11288 3' -57 NC_003083.1 + 72779 0.66 0.841638
Target:  5'- --uCGGUACGUGCgcgGCCUgccagGUCGACGUUu -3'
miRNA:   3'- ucuGCCGUGCAUG---UGGG-----CAGCUGCGG- -5'
11288 3' -57 NC_003083.1 + 87684 0.66 0.833478
Target:  5'- uGGCGGUuaaacACGggcaACaACCCGUCGGcCGCa -3'
miRNA:   3'- uCUGCCG-----UGCa---UG-UGGGCAGCU-GCGg -5'
11288 3' -57 NC_003083.1 + 51616 0.67 0.825137
Target:  5'- -uACGGUGCGUugGCaauuagCGUC-ACGCCa -3'
miRNA:   3'- ucUGCCGUGCAugUGg-----GCAGcUGCGG- -5'
11288 3' -57 NC_003083.1 + 56920 0.67 0.825137
Target:  5'- uGGCGGCGCcgacACGCUCGgcaaaGACGCa -3'
miRNA:   3'- uCUGCCGUGca--UGUGGGCag---CUGCGg -5'
11288 3' -57 NC_003083.1 + 88108 0.67 0.816622
Target:  5'- -cGCGGCACc-GCGCCCG-CuGCGCUg -3'
miRNA:   3'- ucUGCCGUGcaUGUGGGCaGcUGCGG- -5'
11288 3' -57 NC_003083.1 + 24052 0.67 0.807942
Target:  5'- cGACGGUGCGUugGCaa-UCGGCuugGCCa -3'
miRNA:   3'- uCUGCCGUGCAugUGggcAGCUG---CGG- -5'
11288 3' -57 NC_003083.1 + 72834 0.67 0.799105
Target:  5'- cGACGGgugUACGUGCcguCUCGgaUCGACGUCu -3'
miRNA:   3'- uCUGCC---GUGCAUGu--GGGC--AGCUGCGG- -5'
11288 3' -57 NC_003083.1 + 108463 0.69 0.683953
Target:  5'- cGAUGGCGuguugcUGUGCG-CCGUCGAUagGCCg -3'
miRNA:   3'- uCUGCCGU------GCAUGUgGGCAGCUG--CGG- -5'
11288 3' -57 NC_003083.1 + 51307 0.69 0.67387
Target:  5'- uGACGGCGCGUuagaGCGCaagccgcgUUGUUGGCGCa -3'
miRNA:   3'- uCUGCCGUGCA----UGUG--------GGCAGCUGCGg -5'
11288 3' -57 NC_003083.1 + 59244 0.7 0.663753
Target:  5'- cGACGGCACcggucaacuuGUGCACaugcaUGUCGACGauaCg -3'
miRNA:   3'- uCUGCCGUG----------CAUGUGg----GCAGCUGCg--G- -5'
11288 3' -57 NC_003083.1 + 118026 0.7 0.623116
Target:  5'- uGGCGGagGCGgagGCACCUGaugCGGCGUCa -3'
miRNA:   3'- uCUGCCg-UGCa--UGUGGGCa--GCUGCGG- -5'
11288 3' -57 NC_003083.1 + 43504 0.7 0.623116
Target:  5'- uGGCGGCACGcgcauauuUGCACUCGUCGuuuugagaGUCa -3'
miRNA:   3'- uCUGCCGUGC--------AUGUGGGCAGCug------CGG- -5'
11288 3' -57 NC_003083.1 + 44373 0.71 0.552526
Target:  5'- uGugGGCGCcugcaGUGCGCCCGcacgguuauuugUCGGUGCCa -3'
miRNA:   3'- uCugCCGUG-----CAUGUGGGC------------AGCUGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.