miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11289 3' -58.4 NC_003083.1 + 114337 0.66 0.79944
Target:  5'- aCCaGCGCCCGUuuacccuaUGcCGGC-AC-CCCGCa -3'
miRNA:   3'- -GG-CGCGGGCA--------AC-GUUGuUGcGGGCGc -5'
11289 3' -58.4 NC_003083.1 + 112805 0.72 0.413849
Target:  5'- aCGCGCgaUUGUUaaCAACAACGCCCGCu -3'
miRNA:   3'- gGCGCG--GGCAAc-GUUGUUGCGGGCGc -5'
11289 3' -58.4 NC_003083.1 + 104793 0.73 0.402738
Target:  5'- aCGCGCCCGUgguuuuuguaUGUGauagugcgucagucACAACGUCCGCc -3'
miRNA:   3'- gGCGCGGGCA----------ACGU--------------UGUUGCGGGCGc -5'
11289 3' -58.4 NC_003083.1 + 102469 0.67 0.704771
Target:  5'- gCCGCGaCCUGUcGCAGacucCAACGCCguguuaGCGc -3'
miRNA:   3'- -GGCGC-GGGCAaCGUU----GUUGCGGg-----CGC- -5'
11289 3' -58.4 NC_003083.1 + 100613 0.69 0.614135
Target:  5'- aCGCGCauGUgcGCAACGGCGUgCGCa -3'
miRNA:   3'- gGCGCGggCAa-CGUUGUUGCGgGCGc -5'
11289 3' -58.4 NC_003083.1 + 97540 0.71 0.49559
Target:  5'- aCCGUGCCC---GCAACcgcCGCCCGUa -3'
miRNA:   3'- -GGCGCGGGcaaCGUUGuu-GCGGGCGc -5'
11289 3' -58.4 NC_003083.1 + 96562 0.67 0.743858
Target:  5'- gCCGCGUuuGUccacaaaGCAGCGGCGCUCuuGUGu -3'
miRNA:   3'- -GGCGCGggCAa------CGUUGUUGCGGG--CGC- -5'
11289 3' -58.4 NC_003083.1 + 94677 0.69 0.624256
Target:  5'- aCGCGCCUugaaUGCGACAACGauuCCGaCGa -3'
miRNA:   3'- gGCGCGGGca--ACGUUGUUGCg--GGC-GC- -5'
11289 3' -58.4 NC_003083.1 + 94338 0.66 0.781414
Target:  5'- aCGCGCCCGccaaacaCGACGaagGCGCCCcaGCu -3'
miRNA:   3'- gGCGCGGGCaac----GUUGU---UGCGGG--CGc -5'
11289 3' -58.4 NC_003083.1 + 88261 0.66 0.772199
Target:  5'- cCCGCGCaaaCGcagcGCAGCGgGCGCggugCCGCGa -3'
miRNA:   3'- -GGCGCGg--GCaa--CGUUGU-UGCG----GGCGC- -5'
11289 3' -58.4 NC_003083.1 + 88088 0.78 0.208551
Target:  5'- gCCGCGCCgGUcguuacccucGCGGCAccGCGCCCGCu -3'
miRNA:   3'- -GGCGCGGgCAa---------CGUUGU--UGCGGGCGc -5'
11289 3' -58.4 NC_003083.1 + 74189 0.68 0.668754
Target:  5'- aCGCGgCCGuUUGCGcguuguuuauauuguGCAACauGUCCGCGg -3'
miRNA:   3'- gGCGCgGGC-AACGU---------------UGUUG--CGGGCGC- -5'
11289 3' -58.4 NC_003083.1 + 74081 0.71 0.513791
Target:  5'- gCGCGUUCGcUUGCAGCGACucaaccaGCuuGCGg -3'
miRNA:   3'- gGCGCGGGC-AACGUUGUUG-------CGggCGC- -5'
11289 3' -58.4 NC_003083.1 + 73797 1.1 0.001321
Target:  5'- cCCGCGCCCGUUGCAACAACGCCCGCGu -3'
miRNA:   3'- -GGCGCGGGCAACGUUGUUGCGGGCGC- -5'
11289 3' -58.4 NC_003083.1 + 73731 0.73 0.37217
Target:  5'- aCGCGUuuGgcGCGACGuUGCCCGCc -3'
miRNA:   3'- gGCGCGggCaaCGUUGUuGCGGGCGc -5'
11289 3' -58.4 NC_003083.1 + 61773 0.66 0.789595
Target:  5'- aCCaGCGCCCGUcGCAgaagccgguccuaAUAACGCaCaagGCGg -3'
miRNA:   3'- -GG-CGCGGGCAaCGU-------------UGUUGCG-Gg--CGC- -5'
11289 3' -58.4 NC_003083.1 + 51292 0.66 0.798552
Target:  5'- gCGCGCgCGuUUGUuuGACGGCGCguuagagcgcaagCCGCGu -3'
miRNA:   3'- gGCGCGgGC-AACG--UUGUUGCG-------------GGCGC- -5'
11289 3' -58.4 NC_003083.1 + 50688 0.66 0.753413
Target:  5'- aCGCGCCCaUUGaaAACGuuGCGCCUGUu -3'
miRNA:   3'- gGCGCGGGcAACg-UUGU--UGCGGGCGc -5'
11289 3' -58.4 NC_003083.1 + 47268 0.69 0.59394
Target:  5'- uCCGCGCaCGUauacaauaucgUGCAACGaaGCGuUCCGCGu -3'
miRNA:   3'- -GGCGCGgGCA-----------ACGUUGU--UGC-GGGCGC- -5'
11289 3' -58.4 NC_003083.1 + 46164 0.67 0.714655
Target:  5'- aUCGCGCuuGUUG-----GCGUCCGCGc -3'
miRNA:   3'- -GGCGCGggCAACguuguUGCGGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.