Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11290 | 3' | -51.7 | NC_003083.1 | + | 1825 | 0.69 | 0.911601 |
Target: 5'- cGUCGUcgguGCACGC--CGGc-GUCGCCGCa -3' miRNA: 3'- -CAGCG----UGUGUGuuGCUuaCAGCGGCG- -5' |
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11290 | 3' | -51.7 | NC_003083.1 | + | 62966 | 0.69 | 0.911601 |
Target: 5'- uUUGCGCACGCuagucACGc-UGUCaGCCGCc -3' miRNA: 3'- cAGCGUGUGUGu----UGCuuACAG-CGGCG- -5' |
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11290 | 3' | -51.7 | NC_003083.1 | + | 112667 | 0.69 | 0.917693 |
Target: 5'- aUCGCauuACGCGCAguaACG-AUGU-GCCGCg -3' miRNA: 3'- cAGCG---UGUGUGU---UGCuUACAgCGGCG- -5' |
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11290 | 3' | -51.7 | NC_003083.1 | + | 25032 | 0.69 | 0.917693 |
Target: 5'- uUUGUGCACGCGACGc-UGUCaCCGUa -3' miRNA: 3'- cAGCGUGUGUGUUGCuuACAGcGGCG- -5' |
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11290 | 3' | -51.7 | NC_003083.1 | + | 60465 | 0.69 | 0.917693 |
Target: 5'- -gCGUACACggGCAACGGuguggGUUGCCGa -3' miRNA: 3'- caGCGUGUG--UGUUGCUua---CAGCGGCg -5' |
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11290 | 3' | -51.7 | NC_003083.1 | + | 28340 | 0.68 | 0.928555 |
Target: 5'- cGUUGCACuAUACGACacaauuuuugccgGAagcGUGUCGCgCGCa -3' miRNA: 3'- -CAGCGUG-UGUGUUG-------------CU---UACAGCG-GCG- -5' |
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11290 | 3' | -51.7 | NC_003083.1 | + | 30539 | 0.68 | 0.934414 |
Target: 5'- -aCGUugGCACAgcACGAcac-CGCCGCg -3' miRNA: 3'- caGCGugUGUGU--UGCUuacaGCGGCG- -5' |
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11290 | 3' | -51.7 | NC_003083.1 | + | 28504 | 0.68 | 0.939468 |
Target: 5'- --aGUuuaACGCAGCGGuuuagcaaaAUGUUGCCGCg -3' miRNA: 3'- cagCGug-UGUGUUGCU---------UACAGCGGCG- -5' |
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11290 | 3' | -51.7 | NC_003083.1 | + | 58273 | 0.68 | 0.944265 |
Target: 5'- --gGUGCGCACGACGugcAUGUggUGCCGUc -3' miRNA: 3'- cagCGUGUGUGUUGCu--UACA--GCGGCG- -5' |
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11290 | 3' | -51.7 | NC_003083.1 | + | 115440 | 0.68 | 0.944265 |
Target: 5'- -aCGUuuccauGCACACAGCGcaaGUgGCCGCc -3' miRNA: 3'- caGCG------UGUGUGUUGCuuaCAgCGGCG- -5' |
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11290 | 3' | -51.7 | NC_003083.1 | + | 71806 | 0.68 | 0.944265 |
Target: 5'- -gCGCGggUugGCcGCG-AUGUCGCUGCa -3' miRNA: 3'- caGCGU--GugUGuUGCuUACAGCGGCG- -5' |
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11290 | 3' | -51.7 | NC_003083.1 | + | 8893 | 0.68 | 0.948806 |
Target: 5'- aUCGCGgGuuCACAugGAaacaccaaaaAUGUUGCCGUc -3' miRNA: 3'- cAGCGUgU--GUGUugCU----------UACAGCGGCG- -5' |
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11290 | 3' | -51.7 | NC_003083.1 | + | 88260 | 0.67 | 0.952677 |
Target: 5'- -cCGCGCaaacgcaGCGCAGCGGGcGcggUGCCGCg -3' miRNA: 3'- caGCGUG-------UGUGUUGCUUaCa--GCGGCG- -5' |
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11290 | 3' | -51.7 | NC_003083.1 | + | 35320 | 0.67 | 0.953094 |
Target: 5'- -cCGCAUugGCAACGAGgUGaCG-CGCa -3' miRNA: 3'- caGCGUGugUGUUGCUU-ACaGCgGCG- -5' |
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11290 | 3' | -51.7 | NC_003083.1 | + | 28442 | 0.67 | 0.956741 |
Target: 5'- -gCGUACGCAUAACcGcguuucagcacccGUGUCGCgCGCu -3' miRNA: 3'- caGCGUGUGUGUUGcU-------------UACAGCG-GCG- -5' |
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11290 | 3' | -51.7 | NC_003083.1 | + | 15680 | 0.67 | 0.957134 |
Target: 5'- uUCGC-CGCACAACGAu--UUGCCa- -3' miRNA: 3'- cAGCGuGUGUGUUGCUuacAGCGGcg -5' |
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11290 | 3' | -51.7 | NC_003083.1 | + | 64552 | 0.67 | 0.960929 |
Target: 5'- cGUCGCcaACACcgucgcCAACGcc-GUCGCCGUc -3' miRNA: 3'- -CAGCG--UGUGu-----GUUGCuuaCAGCGGCG- -5' |
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11290 | 3' | -51.7 | NC_003083.1 | + | 28270 | 0.67 | 0.960929 |
Target: 5'- uUUGCACAU-CAGCG-GUGUCaacgugcagcuGCCGCg -3' miRNA: 3'- cAGCGUGUGuGUUGCuUACAG-----------CGGCG- -5' |
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11290 | 3' | -51.7 | NC_003083.1 | + | 24180 | 0.67 | 0.960929 |
Target: 5'- -aCGCAC-CGuCGGCGGAUGucccacUCGCCGa -3' miRNA: 3'- caGCGUGuGU-GUUGCUUAC------AGCGGCg -5' |
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11290 | 3' | -51.7 | NC_003083.1 | + | 28822 | 0.67 | 0.964486 |
Target: 5'- cUUGCACgccggccauuguGCACAAgcuUGAuuUGUUGCCGCa -3' miRNA: 3'- cAGCGUG------------UGUGUU---GCUu-ACAGCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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