miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11290 3' -51.7 NC_003083.1 + 87357 1.12 0.003542
Target:  5'- cGUCGCACACACAACGAAUGUCGCCGCu -3'
miRNA:   3'- -CAGCGUGUGUGUUGCUUACAGCGGCG- -5'
11290 3' -51.7 NC_003083.1 + 79842 0.73 0.722354
Target:  5'- gGUCGCGCAauuaGACGGGauaUCGCCGCg -3'
miRNA:   3'- -CAGCGUGUgug-UUGCUUac-AGCGGCG- -5'
11290 3' -51.7 NC_003083.1 + 91999 0.72 0.762854
Target:  5'- --gGUAgACGCAauaacGCGAccGUCGCCGCg -3'
miRNA:   3'- cagCGUgUGUGU-----UGCUuaCAGCGGCG- -5'
11290 3' -51.7 NC_003083.1 + 28529 0.72 0.762854
Target:  5'- gGUCGCAUAaccaaGCGGCG-GUGUCGuCUGCu -3'
miRNA:   3'- -CAGCGUGUg----UGUUGCuUACAGC-GGCG- -5'
11290 3' -51.7 NC_003083.1 + 106463 0.72 0.800406
Target:  5'- aUCGUACACACuuauuaugauuuaAACGAcGUGUUGCaCGCc -3'
miRNA:   3'- cAGCGUGUGUG-------------UUGCU-UACAGCG-GCG- -5'
11290 3' -51.7 NC_003083.1 + 114398 0.71 0.810568
Target:  5'- cGUCGuCACcugacaACACGACGccGGUGcagCGCCGCa -3'
miRNA:   3'- -CAGC-GUG------UGUGUUGC--UUACa--GCGGCG- -5'
11290 3' -51.7 NC_003083.1 + 4486 0.71 0.819621
Target:  5'- cGUCGUugACGCACAGCG-----CGCCGCu -3'
miRNA:   3'- -CAGCG--UGUGUGUUGCuuacaGCGGCG- -5'
11290 3' -51.7 NC_003083.1 + 9470 0.71 0.845635
Target:  5'- gGUCGCGCGCGCAAuCGuu--UCGgCGCu -3'
miRNA:   3'- -CAGCGUGUGUGUU-GCuuacAGCgGCG- -5'
11290 3' -51.7 NC_003083.1 + 20915 0.7 0.853896
Target:  5'- -aCGCACACGC--UGAAga-CGCCGCg -3'
miRNA:   3'- caGCGUGUGUGuuGCUUacaGCGGCG- -5'
11290 3' -51.7 NC_003083.1 + 87176 0.7 0.853896
Target:  5'- gGUUGCGCGcCAC-ACGGAcgcGUCGCCGa -3'
miRNA:   3'- -CAGCGUGU-GUGuUGCUUa--CAGCGGCg -5'
11290 3' -51.7 NC_003083.1 + 109491 0.7 0.861938
Target:  5'- -aUGCACGCGCAGaccCGugauGUGUCGCgUGCg -3'
miRNA:   3'- caGCGUGUGUGUU---GCu---UACAGCG-GCG- -5'
11290 3' -51.7 NC_003083.1 + 51429 0.7 0.868984
Target:  5'- -cCGCAUACACAAUGGcgcgcaacccguuGUGUCGCgUGUu -3'
miRNA:   3'- caGCGUGUGUGUUGCU-------------UACAGCG-GCG- -5'
11290 3' -51.7 NC_003083.1 + 23224 0.7 0.868984
Target:  5'- uGUCGCguuagacgcgGCGCGCAAUGAcgaaaaaGUGUgGCgCGCg -3'
miRNA:   3'- -CAGCG----------UGUGUGUUGCU-------UACAgCG-GCG- -5'
11290 3' -51.7 NC_003083.1 + 38674 0.7 0.869755
Target:  5'- -cCGgGCACAUAAU--GUGUCcGCCGCg -3'
miRNA:   3'- caGCgUGUGUGUUGcuUACAG-CGGCG- -5'
11290 3' -51.7 NC_003083.1 + 8451 0.7 0.87734
Target:  5'- aGUUGCGCGCACucUGAAcacUGUCGacguguCCGCa -3'
miRNA:   3'- -CAGCGUGUGUGuuGCUU---ACAGC------GGCG- -5'
11290 3' -51.7 NC_003083.1 + 99518 0.69 0.898647
Target:  5'- -gUGC-CGCGCGACGAAaacuuUUGCCGCa -3'
miRNA:   3'- caGCGuGUGUGUUGCUUac---AGCGGCG- -5'
11290 3' -51.7 NC_003083.1 + 51273 0.69 0.898647
Target:  5'- -aCGCGCACAUuaAACGAGcG-CGCgCGCg -3'
miRNA:   3'- caGCGUGUGUG--UUGCUUaCaGCG-GCG- -5'
11290 3' -51.7 NC_003083.1 + 31985 0.69 0.898647
Target:  5'- -aCGCAgGCGCAACu-AUGgacuaugacgCGCCGCa -3'
miRNA:   3'- caGCGUgUGUGUUGcuUACa---------GCGGCG- -5'
11290 3' -51.7 NC_003083.1 + 27039 0.69 0.905252
Target:  5'- aGUUGCGCACGgcauCGAUGAAUuGcUCGCUGUg -3'
miRNA:   3'- -CAGCGUGUGU----GUUGCUUA-C-AGCGGCG- -5'
11290 3' -51.7 NC_003083.1 + 71977 0.69 0.905252
Target:  5'- -cUGCACuuCAUAACGAccaGUGgaCGCCGCg -3'
miRNA:   3'- caGCGUGu-GUGUUGCU---UACa-GCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.