Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11290 | 3' | -51.7 | NC_003083.1 | + | 1825 | 0.69 | 0.911601 |
Target: 5'- cGUCGUcgguGCACGC--CGGc-GUCGCCGCa -3' miRNA: 3'- -CAGCG----UGUGUGuuGCUuaCAGCGGCG- -5' |
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11290 | 3' | -51.7 | NC_003083.1 | + | 4486 | 0.71 | 0.819621 |
Target: 5'- cGUCGUugACGCACAGCG-----CGCCGCu -3' miRNA: 3'- -CAGCG--UGUGUGUUGCuuacaGCGGCG- -5' |
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11290 | 3' | -51.7 | NC_003083.1 | + | 8451 | 0.7 | 0.87734 |
Target: 5'- aGUUGCGCGCACucUGAAcacUGUCGacguguCCGCa -3' miRNA: 3'- -CAGCGUGUGUGuuGCUU---ACAGC------GGCG- -5' |
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11290 | 3' | -51.7 | NC_003083.1 | + | 8893 | 0.68 | 0.948806 |
Target: 5'- aUCGCGgGuuCACAugGAaacaccaaaaAUGUUGCCGUc -3' miRNA: 3'- cAGCGUgU--GUGUugCU----------UACAGCGGCG- -5' |
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11290 | 3' | -51.7 | NC_003083.1 | + | 9470 | 0.71 | 0.845635 |
Target: 5'- gGUCGCGCGCGCAAuCGuu--UCGgCGCu -3' miRNA: 3'- -CAGCGUGUGUGUU-GCuuacAGCgGCG- -5' |
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11290 | 3' | -51.7 | NC_003083.1 | + | 11924 | 0.66 | 0.978908 |
Target: 5'- -gCGCuCAUcaACAACGggUacggcGUCGUCGCc -3' miRNA: 3'- caGCGuGUG--UGUUGCuuA-----CAGCGGCG- -5' |
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11290 | 3' | -51.7 | NC_003083.1 | + | 15680 | 0.67 | 0.957134 |
Target: 5'- uUCGC-CGCACAACGAu--UUGCCa- -3' miRNA: 3'- cAGCGuGUGUGUUGCUuacAGCGGcg -5' |
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11290 | 3' | -51.7 | NC_003083.1 | + | 18697 | 0.67 | 0.967809 |
Target: 5'- aUCGCGgAucuCGCGACGucAAUGUCGaCGCg -3' miRNA: 3'- cAGCGUgU---GUGUUGC--UUACAGCgGCG- -5' |
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11290 | 3' | -51.7 | NC_003083.1 | + | 20915 | 0.7 | 0.853896 |
Target: 5'- -aCGCACACGC--UGAAga-CGCCGCg -3' miRNA: 3'- caGCGUGUGUGuuGCUUacaGCGGCG- -5' |
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11290 | 3' | -51.7 | NC_003083.1 | + | 23224 | 0.7 | 0.868984 |
Target: 5'- uGUCGCguuagacgcgGCGCGCAAUGAcgaaaaaGUGUgGCgCGCg -3' miRNA: 3'- -CAGCG----------UGUGUGUUGCU-------UACAgCG-GCG- -5' |
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11290 | 3' | -51.7 | NC_003083.1 | + | 24180 | 0.67 | 0.960929 |
Target: 5'- -aCGCAC-CGuCGGCGGAUGucccacUCGCCGa -3' miRNA: 3'- caGCGUGuGU-GUUGCUUAC------AGCGGCg -5' |
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11290 | 3' | -51.7 | NC_003083.1 | + | 25032 | 0.69 | 0.917693 |
Target: 5'- uUUGUGCACGCGACGc-UGUCaCCGUa -3' miRNA: 3'- cAGCGUGUGUGUUGCuuACAGcGGCG- -5' |
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11290 | 3' | -51.7 | NC_003083.1 | + | 27039 | 0.69 | 0.905252 |
Target: 5'- aGUUGCGCACGgcauCGAUGAAUuGcUCGCUGUg -3' miRNA: 3'- -CAGCGUGUGU----GUUGCUUA-C-AGCGGCG- -5' |
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11290 | 3' | -51.7 | NC_003083.1 | + | 27706 | 0.66 | 0.973783 |
Target: 5'- -aCGCACGCugGcCGg----CGCCGCa -3' miRNA: 3'- caGCGUGUGugUuGCuuacaGCGGCG- -5' |
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11290 | 3' | -51.7 | NC_003083.1 | + | 28270 | 0.67 | 0.960929 |
Target: 5'- uUUGCACAU-CAGCG-GUGUCaacgugcagcuGCCGCg -3' miRNA: 3'- cAGCGUGUGuGUUGCuUACAG-----------CGGCG- -5' |
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11290 | 3' | -51.7 | NC_003083.1 | + | 28340 | 0.68 | 0.928555 |
Target: 5'- cGUUGCACuAUACGACacaauuuuugccgGAagcGUGUCGCgCGCa -3' miRNA: 3'- -CAGCGUG-UGUGUUG-------------CU---UACAGCG-GCG- -5' |
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11290 | 3' | -51.7 | NC_003083.1 | + | 28442 | 0.67 | 0.956741 |
Target: 5'- -gCGUACGCAUAACcGcguuucagcacccGUGUCGCgCGCu -3' miRNA: 3'- caGCGUGUGUGUUGcU-------------UACAGCG-GCG- -5' |
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11290 | 3' | -51.7 | NC_003083.1 | + | 28504 | 0.68 | 0.939468 |
Target: 5'- --aGUuuaACGCAGCGGuuuagcaaaAUGUUGCCGCg -3' miRNA: 3'- cagCGug-UGUGUUGCU---------UACAGCGGCG- -5' |
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11290 | 3' | -51.7 | NC_003083.1 | + | 28529 | 0.72 | 0.762854 |
Target: 5'- gGUCGCAUAaccaaGCGGCG-GUGUCGuCUGCu -3' miRNA: 3'- -CAGCGUGUg----UGUUGCuUACAGC-GGCG- -5' |
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11290 | 3' | -51.7 | NC_003083.1 | + | 28822 | 0.67 | 0.964486 |
Target: 5'- cUUGCACgccggccauuguGCACAAgcuUGAuuUGUUGCCGCa -3' miRNA: 3'- cAGCGUG------------UGUGUU---GCUu-ACAGCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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