miRNA display CGI


Results 1 - 20 of 55 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11290 3' -51.7 NC_003083.1 + 117768 0.66 0.978908
Target:  5'- -gCGCAUGCGCAuaaGCGuuGUGUaaUGUCGCa -3'
miRNA:   3'- caGCGUGUGUGU---UGCu-UACA--GCGGCG- -5'
11290 3' -51.7 NC_003083.1 + 115440 0.68 0.944265
Target:  5'- -aCGUuuccauGCACACAGCGcaaGUgGCCGCc -3'
miRNA:   3'- caGCG------UGUGUGUUGCuuaCAgCGGCG- -5'
11290 3' -51.7 NC_003083.1 + 114398 0.71 0.810568
Target:  5'- cGUCGuCACcugacaACACGACGccGGUGcagCGCCGCa -3'
miRNA:   3'- -CAGC-GUG------UGUGUUGC--UUACa--GCGGCG- -5'
11290 3' -51.7 NC_003083.1 + 112667 0.69 0.917693
Target:  5'- aUCGCauuACGCGCAguaACG-AUGU-GCCGCg -3'
miRNA:   3'- cAGCG---UGUGUGU---UGCuUACAgCGGCG- -5'
11290 3' -51.7 NC_003083.1 + 109491 0.7 0.861938
Target:  5'- -aUGCACGCGCAGaccCGugauGUGUCGCgUGCg -3'
miRNA:   3'- caGCGUGUGUGUU---GCu---UACAGCG-GCG- -5'
11290 3' -51.7 NC_003083.1 + 106463 0.72 0.800406
Target:  5'- aUCGUACACACuuauuaugauuuaAACGAcGUGUUGCaCGCc -3'
miRNA:   3'- cAGCGUGUGUG-------------UUGCU-UACAGCG-GCG- -5'
11290 3' -51.7 NC_003083.1 + 102425 0.66 0.976448
Target:  5'- -aCGUgACAUACAACG--UGUCGCC-Ca -3'
miRNA:   3'- caGCG-UGUGUGUUGCuuACAGCGGcG- -5'
11290 3' -51.7 NC_003083.1 + 100704 0.66 0.970906
Target:  5'- --aGCAUACGCcauGGCGcaGGUGgCGCCGCc -3'
miRNA:   3'- cagCGUGUGUG---UUGC--UUACaGCGGCG- -5'
11290 3' -51.7 NC_003083.1 + 99518 0.69 0.898647
Target:  5'- -gUGC-CGCGCGACGAAaacuuUUGCCGCa -3'
miRNA:   3'- caGCGuGUGUGUUGCUUac---AGCGGCG- -5'
11290 3' -51.7 NC_003083.1 + 92628 0.66 0.976448
Target:  5'- cGUUGCACACuCAaaauuuuuGCGAA-GUCGUgGUg -3'
miRNA:   3'- -CAGCGUGUGuGU--------UGCUUaCAGCGgCG- -5'
11290 3' -51.7 NC_003083.1 + 91999 0.72 0.762854
Target:  5'- --gGUAgACGCAauaacGCGAccGUCGCCGCg -3'
miRNA:   3'- cagCGUgUGUGU-----UGCUuaCAGCGGCG- -5'
11290 3' -51.7 NC_003083.1 + 88260 0.67 0.952677
Target:  5'- -cCGCGCaaacgcaGCGCAGCGGGcGcggUGCCGCg -3'
miRNA:   3'- caGCGUG-------UGUGUUGCUUaCa--GCGGCG- -5'
11290 3' -51.7 NC_003083.1 + 87357 1.12 0.003542
Target:  5'- cGUCGCACACACAACGAAUGUCGCCGCu -3'
miRNA:   3'- -CAGCGUGUGUGUUGCUUACAGCGGCG- -5'
11290 3' -51.7 NC_003083.1 + 87176 0.7 0.853896
Target:  5'- gGUUGCGCGcCAC-ACGGAcgcGUCGCCGa -3'
miRNA:   3'- -CAGCGUGU-GUGuUGCUUa--CAGCGGCg -5'
11290 3' -51.7 NC_003083.1 + 86885 0.66 0.970906
Target:  5'- -aCGCACGCggacuGCAACGcg---UGCCGCg -3'
miRNA:   3'- caGCGUGUG-----UGUUGCuuacaGCGGCG- -5'
11290 3' -51.7 NC_003083.1 + 84600 0.66 0.973783
Target:  5'- -aCGCACGCGuCGGCGGuaaauUG-CGUCGUg -3'
miRNA:   3'- caGCGUGUGU-GUUGCUu----ACaGCGGCG- -5'
11290 3' -51.7 NC_003083.1 + 79842 0.73 0.722354
Target:  5'- gGUCGCGCAauuaGACGGGauaUCGCCGCg -3'
miRNA:   3'- -CAGCGUGUgug-UUGCUUac-AGCGGCG- -5'
11290 3' -51.7 NC_003083.1 + 72910 0.66 0.978908
Target:  5'- -cCGCGCACGUAcCGAAgaa-GCCGCa -3'
miRNA:   3'- caGCGUGUGUGUuGCUUacagCGGCG- -5'
11290 3' -51.7 NC_003083.1 + 71977 0.69 0.905252
Target:  5'- -cUGCACuuCAUAACGAccaGUGgaCGCCGCg -3'
miRNA:   3'- caGCGUGu-GUGUUGCU---UACa-GCGGCG- -5'
11290 3' -51.7 NC_003083.1 + 71806 0.68 0.944265
Target:  5'- -gCGCGggUugGCcGCG-AUGUCGCUGCa -3'
miRNA:   3'- caGCGU--GugUGuUGCuUACAGCGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.