Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11290 | 3' | -51.7 | NC_003083.1 | + | 64552 | 0.67 | 0.960929 |
Target: 5'- cGUCGCcaACACcgucgcCAACGcc-GUCGCCGUc -3' miRNA: 3'- -CAGCG--UGUGu-----GUUGCuuaCAGCGGCG- -5' |
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11290 | 3' | -51.7 | NC_003083.1 | + | 62966 | 0.69 | 0.911601 |
Target: 5'- uUUGCGCACGCuagucACGc-UGUCaGCCGCc -3' miRNA: 3'- cAGCGUGUGUGu----UGCuuACAG-CGGCG- -5' |
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11290 | 3' | -51.7 | NC_003083.1 | + | 60465 | 0.69 | 0.917693 |
Target: 5'- -gCGUACACggGCAACGGuguggGUUGCCGa -3' miRNA: 3'- caGCGUGUG--UGUUGCUua---CAGCGGCg -5' |
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11290 | 3' | -51.7 | NC_003083.1 | + | 58273 | 0.68 | 0.944265 |
Target: 5'- --gGUGCGCACGACGugcAUGUggUGCCGUc -3' miRNA: 3'- cagCGUGUGUGUUGCu--UACA--GCGGCG- -5' |
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11290 | 3' | -51.7 | NC_003083.1 | + | 52786 | 0.66 | 0.981173 |
Target: 5'- cUUGCA-ACGCAACGAGca-CGCUGCg -3' miRNA: 3'- cAGCGUgUGUGUUGCUUacaGCGGCG- -5' |
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11290 | 3' | -51.7 | NC_003083.1 | + | 51429 | 0.7 | 0.868984 |
Target: 5'- -cCGCAUACACAAUGGcgcgcaacccguuGUGUCGCgUGUu -3' miRNA: 3'- caGCGUGUGUGUUGCU-------------UACAGCG-GCG- -5' |
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11290 | 3' | -51.7 | NC_003083.1 | + | 51273 | 0.69 | 0.898647 |
Target: 5'- -aCGCGCACAUuaAACGAGcG-CGCgCGCg -3' miRNA: 3'- caGCGUGUGUG--UUGCUUaCaGCG-GCG- -5' |
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11290 | 3' | -51.7 | NC_003083.1 | + | 40389 | 0.66 | 0.973783 |
Target: 5'- uUUGguUGCGCAACGGuuugugaguUGUCGCUGUu -3' miRNA: 3'- cAGCguGUGUGUUGCUu--------ACAGCGGCG- -5' |
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11290 | 3' | -51.7 | NC_003083.1 | + | 38674 | 0.7 | 0.869755 |
Target: 5'- -cCGgGCACAUAAU--GUGUCcGCCGCg -3' miRNA: 3'- caGCgUGUGUGUUGcuUACAG-CGGCG- -5' |
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11290 | 3' | -51.7 | NC_003083.1 | + | 38470 | 0.66 | 0.972083 |
Target: 5'- uUUGCGCGCAUGccugcuugauaauguACGcGUGUUGCgGCa -3' miRNA: 3'- cAGCGUGUGUGU---------------UGCuUACAGCGgCG- -5' |
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11290 | 3' | -51.7 | NC_003083.1 | + | 35320 | 0.67 | 0.953094 |
Target: 5'- -cCGCAUugGCAACGAGgUGaCG-CGCa -3' miRNA: 3'- caGCGUGugUGUUGCUU-ACaGCgGCG- -5' |
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11290 | 3' | -51.7 | NC_003083.1 | + | 35209 | 0.66 | 0.97567 |
Target: 5'- --aGCACGgGCAACGcgauuucaauguuguUGUUGCUGCa -3' miRNA: 3'- cagCGUGUgUGUUGCuu-------------ACAGCGGCG- -5' |
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11290 | 3' | -51.7 | NC_003083.1 | + | 33559 | 0.66 | 0.970606 |
Target: 5'- uGUUGCACaugagcaagcuggACAUGACGuuaaacUCGCCGCa -3' miRNA: 3'- -CAGCGUG-------------UGUGUUGCuuac--AGCGGCG- -5' |
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11290 | 3' | -51.7 | NC_003083.1 | + | 31985 | 0.69 | 0.898647 |
Target: 5'- -aCGCAgGCGCAACu-AUGgacuaugacgCGCCGCa -3' miRNA: 3'- caGCGUgUGUGUUGcuUACa---------GCGGCG- -5' |
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11290 | 3' | -51.7 | NC_003083.1 | + | 30539 | 0.68 | 0.934414 |
Target: 5'- -aCGUugGCACAgcACGAcac-CGCCGCg -3' miRNA: 3'- caGCGugUGUGU--UGCUuacaGCGGCG- -5' |
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11290 | 3' | -51.7 | NC_003083.1 | + | 28822 | 0.67 | 0.964486 |
Target: 5'- cUUGCACgccggccauuguGCACAAgcuUGAuuUGUUGCCGCa -3' miRNA: 3'- cAGCGUG------------UGUGUU---GCUu-ACAGCGGCG- -5' |
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11290 | 3' | -51.7 | NC_003083.1 | + | 28529 | 0.72 | 0.762854 |
Target: 5'- gGUCGCAUAaccaaGCGGCG-GUGUCGuCUGCu -3' miRNA: 3'- -CAGCGUGUg----UGUUGCuUACAGC-GGCG- -5' |
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11290 | 3' | -51.7 | NC_003083.1 | + | 28504 | 0.68 | 0.939468 |
Target: 5'- --aGUuuaACGCAGCGGuuuagcaaaAUGUUGCCGCg -3' miRNA: 3'- cagCGug-UGUGUUGCU---------UACAGCGGCG- -5' |
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11290 | 3' | -51.7 | NC_003083.1 | + | 28442 | 0.67 | 0.956741 |
Target: 5'- -gCGUACGCAUAACcGcguuucagcacccGUGUCGCgCGCu -3' miRNA: 3'- caGCGUGUGUGUUGcU-------------UACAGCG-GCG- -5' |
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11290 | 3' | -51.7 | NC_003083.1 | + | 28340 | 0.68 | 0.928555 |
Target: 5'- cGUUGCACuAUACGACacaauuuuugccgGAagcGUGUCGCgCGCa -3' miRNA: 3'- -CAGCGUG-UGUGUUG-------------CU---UACAGCG-GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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