miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11292 3' -55.9 NC_003083.1 + 87756 0.66 0.87232
Target:  5'- ---aGCGCuACGCCGUcaUGCuGUACccGCu -3'
miRNA:   3'- gucaCGCG-UGCGGCA--ACG-CGUGuaCG- -5'
11292 3' -55.9 NC_003083.1 + 38663 0.66 0.87232
Target:  5'- aGGUGCGC-CGCCc--GgGCACAuaaUGUg -3'
miRNA:   3'- gUCACGCGuGCGGcaaCgCGUGU---ACG- -5'
11292 3' -55.9 NC_003083.1 + 43309 0.66 0.864725
Target:  5'- -uGUGCGCACGgUGU--UGUugAUGCc -3'
miRNA:   3'- guCACGCGUGCgGCAacGCGugUACG- -5'
11292 3' -55.9 NC_003083.1 + 62965 0.66 0.864725
Target:  5'- --uUGCGCACGCUaGUcacgcUGUcagccgccacGCGCGUGCg -3'
miRNA:   3'- gucACGCGUGCGG-CA-----ACG----------CGUGUACG- -5'
11292 3' -55.9 NC_003083.1 + 37867 0.66 0.848885
Target:  5'- aAGUcaGCGUcCGCCGUggacaacgugUGCGC-CAUGUu -3'
miRNA:   3'- gUCA--CGCGuGCGGCA----------ACGCGuGUACG- -5'
11292 3' -55.9 NC_003083.1 + 59219 0.66 0.848885
Target:  5'- aAGUaUGCccaGCGCCGUUaaacGCGCAUggGUGCg -3'
miRNA:   3'- gUCAcGCG---UGCGGCAA----CGCGUG--UACG- -5'
11292 3' -55.9 NC_003083.1 + 27089 0.66 0.840653
Target:  5'- cCAGUGCGCACGCgcUUGCcccGUAUAUa- -3'
miRNA:   3'- -GUCACGCGUGCGgcAACG---CGUGUAcg -5'
11292 3' -55.9 NC_003083.1 + 78057 0.66 0.835617
Target:  5'- uGGUG-GCAgCGCCuugcggucauuacacGUUGUGCACAgucUGCa -3'
miRNA:   3'- gUCACgCGU-GCGG---------------CAACGCGUGU---ACG- -5'
11292 3' -55.9 NC_003083.1 + 70653 0.66 0.835617
Target:  5'- uCGGUGCGCGCGggugUGCucaagucguaaauuuGUACGUGCg -3'
miRNA:   3'- -GUCACGCGUGCggcaACG---------------CGUGUACG- -5'
11292 3' -55.9 NC_003083.1 + 44376 0.67 0.814796
Target:  5'- uGGUGUGgGCGCCugcaGUGCGCccGCa -3'
miRNA:   3'- gUCACGCgUGCGGcaa-CGCGUGuaCG- -5'
11292 3' -55.9 NC_003083.1 + 1770 0.67 0.805819
Target:  5'- aCAGcGCGCcacgGCGCCaauaaugUGCGgCACAUGUu -3'
miRNA:   3'- -GUCaCGCG----UGCGGca-----ACGC-GUGUACG- -5'
11292 3' -55.9 NC_003083.1 + 43072 0.67 0.805819
Target:  5'- -cGUGUuaAUGUCGguggcUUGCGUGCAUGCg -3'
miRNA:   3'- guCACGcgUGCGGC-----AACGCGUGUACG- -5'
11292 3' -55.9 NC_003083.1 + 4495 0.67 0.796676
Target:  5'- -uGUGaCaCGCGUCGUUGaCGCACA-GCg -3'
miRNA:   3'- guCAC-GcGUGCGGCAAC-GCGUGUaCG- -5'
11292 3' -55.9 NC_003083.1 + 21088 0.67 0.795753
Target:  5'- gCGGUGUGCguguuauAUGCCGUcacUGUGCuaaGCGUGUu -3'
miRNA:   3'- -GUCACGCG-------UGCGGCA---ACGCG---UGUACG- -5'
11292 3' -55.9 NC_003083.1 + 83321 0.67 0.787378
Target:  5'- aAGUGUGuUACG-UGUUGCGCAacagUAUGCa -3'
miRNA:   3'- gUCACGC-GUGCgGCAACGCGU----GUACG- -5'
11292 3' -55.9 NC_003083.1 + 51416 0.67 0.787378
Target:  5'- ---cGCGCGCGCuCGUuuaaUGUGCGCGUc- -3'
miRNA:   3'- gucaCGCGUGCG-GCA----ACGCGUGUAcg -5'
11292 3' -55.9 NC_003083.1 + 100620 0.67 0.787378
Target:  5'- -uGUGCGCaACGgCG-UGCGCACugaacGCu -3'
miRNA:   3'- guCACGCG-UGCgGCaACGCGUGua---CG- -5'
11292 3' -55.9 NC_003083.1 + 1619 0.67 0.787378
Target:  5'- -uGUGcCGCacauuauugGCGCCGUgGCGCGC-UGUa -3'
miRNA:   3'- guCAC-GCG---------UGCGGCAaCGCGUGuACG- -5'
11292 3' -55.9 NC_003083.1 + 9813 0.67 0.787378
Target:  5'- -uGUGCGaaucCGuuGUaaUGcCGCACGUGCg -3'
miRNA:   3'- guCACGCgu--GCggCA--AC-GCGUGUACG- -5'
11292 3' -55.9 NC_003083.1 + 16365 0.67 0.787378
Target:  5'- -uGUGUGCGCGgCGUgcauaucgcaaUGCGCcCAUGa -3'
miRNA:   3'- guCACGCGUGCgGCA-----------ACGCGuGUACg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.