Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11292 | 3' | -55.9 | NC_003083.1 | + | 1619 | 0.67 | 0.787378 |
Target: 5'- -uGUGcCGCacauuauugGCGCCGUgGCGCGC-UGUa -3' miRNA: 3'- guCAC-GCG---------UGCGGCAaCGCGUGuACG- -5' |
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11292 | 3' | -55.9 | NC_003083.1 | + | 1770 | 0.67 | 0.805819 |
Target: 5'- aCAGcGCGCcacgGCGCCaauaaugUGCGgCACAUGUu -3' miRNA: 3'- -GUCaCGCG----UGCGGca-----ACGC-GUGUACG- -5' |
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11292 | 3' | -55.9 | NC_003083.1 | + | 4495 | 0.67 | 0.796676 |
Target: 5'- -uGUGaCaCGCGUCGUUGaCGCACA-GCg -3' miRNA: 3'- guCAC-GcGUGCGGCAAC-GCGUGUaCG- -5' |
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11292 | 3' | -55.9 | NC_003083.1 | + | 9813 | 0.67 | 0.787378 |
Target: 5'- -uGUGCGaaucCGuuGUaaUGcCGCACGUGCg -3' miRNA: 3'- guCACGCgu--GCggCA--AC-GCGUGUACG- -5' |
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11292 | 3' | -55.9 | NC_003083.1 | + | 16365 | 0.67 | 0.787378 |
Target: 5'- -uGUGUGCGCGgCGUgcauaucgcaaUGCGCcCAUGa -3' miRNA: 3'- guCACGCGUGCgGCA-----------ACGCGuGUACg -5' |
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11292 | 3' | -55.9 | NC_003083.1 | + | 16608 | 0.68 | 0.738886 |
Target: 5'- ---cGCGCACuGCCGUUucguaaauuuuaGCGUcCGUGCa -3' miRNA: 3'- gucaCGCGUG-CGGCAA------------CGCGuGUACG- -5' |
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11292 | 3' | -55.9 | NC_003083.1 | + | 20092 | 0.69 | 0.702392 |
Target: 5'- aGGUGUGUuacgACGCCGaaaaaauuguaugcuUUGUGC-CAUGCg -3' miRNA: 3'- gUCACGCG----UGCGGC---------------AACGCGuGUACG- -5' |
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11292 | 3' | -55.9 | NC_003083.1 | + | 21088 | 0.67 | 0.795753 |
Target: 5'- gCGGUGUGCguguuauAUGCCGUcacUGUGCuaaGCGUGUu -3' miRNA: 3'- -GUCACGCG-------UGCGGCA---ACGCG---UGUACG- -5' |
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11292 | 3' | -55.9 | NC_003083.1 | + | 22026 | 0.69 | 0.708543 |
Target: 5'- ---gGCGUuaauACGCUGUUGCuGUACAUGUu -3' miRNA: 3'- gucaCGCG----UGCGGCAACG-CGUGUACG- -5' |
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11292 | 3' | -55.9 | NC_003083.1 | + | 27061 | 0.71 | 0.552611 |
Target: 5'- gCAGcUGCGUugGCgguguccaaGUUGCGCACG-GCa -3' miRNA: 3'- -GUC-ACGCGugCGg--------CAACGCGUGUaCG- -5' |
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11292 | 3' | -55.9 | NC_003083.1 | + | 27089 | 0.66 | 0.840653 |
Target: 5'- cCAGUGCGCACGCgcUUGCcccGUAUAUa- -3' miRNA: 3'- -GUCACGCGUGCGgcAACG---CGUGUAcg -5' |
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11292 | 3' | -55.9 | NC_003083.1 | + | 28823 | 0.67 | 0.787378 |
Target: 5'- ----uUGCACGCCGgccaUUGUGCACAaGCu -3' miRNA: 3'- gucacGCGUGCGGC----AACGCGUGUaCG- -5' |
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11292 | 3' | -55.9 | NC_003083.1 | + | 32167 | 0.68 | 0.758644 |
Target: 5'- ---gGCGCugGCCGaaaCGCACAcUGCc -3' miRNA: 3'- gucaCGCGugCGGCaacGCGUGU-ACG- -5' |
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11292 | 3' | -55.9 | NC_003083.1 | + | 37867 | 0.66 | 0.848885 |
Target: 5'- aAGUcaGCGUcCGCCGUggacaacgugUGCGC-CAUGUu -3' miRNA: 3'- gUCA--CGCGuGCGGCA----------ACGCGuGUACG- -5' |
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11292 | 3' | -55.9 | NC_003083.1 | + | 38663 | 0.66 | 0.87232 |
Target: 5'- aGGUGCGC-CGCCc--GgGCACAuaaUGUg -3' miRNA: 3'- gUCACGCGuGCGGcaaCgCGUGU---ACG- -5' |
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11292 | 3' | -55.9 | NC_003083.1 | + | 42544 | 0.68 | 0.758644 |
Target: 5'- uCGGUGuCGCAC-UCGUuuaUGCGCACGucagaaacuUGCg -3' miRNA: 3'- -GUCAC-GCGUGcGGCA---ACGCGUGU---------ACG- -5' |
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11292 | 3' | -55.9 | NC_003083.1 | + | 43072 | 0.67 | 0.805819 |
Target: 5'- -cGUGUuaAUGUCGguggcUUGCGUGCAUGCg -3' miRNA: 3'- guCACGcgUGCGGC-----AACGCGUGUACG- -5' |
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11292 | 3' | -55.9 | NC_003083.1 | + | 43309 | 0.66 | 0.864725 |
Target: 5'- -uGUGCGCACGgUGU--UGUugAUGCc -3' miRNA: 3'- guCACGCGUGCgGCAacGCGugUACG- -5' |
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11292 | 3' | -55.9 | NC_003083.1 | + | 44376 | 0.67 | 0.814796 |
Target: 5'- uGGUGUGgGCGCCugcaGUGCGCccGCa -3' miRNA: 3'- gUCACGCgUGCGGcaa-CGCGUGuaCG- -5' |
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11292 | 3' | -55.9 | NC_003083.1 | + | 51416 | 0.67 | 0.787378 |
Target: 5'- ---cGCGCGCGCuCGUuuaaUGUGCGCGUc- -3' miRNA: 3'- gucaCGCGUGCG-GCA----ACGCGUGUAcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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