Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11292 | 3' | -55.9 | NC_003083.1 | + | 51442 | 0.68 | 0.748819 |
Target: 5'- ---gGCGCGCaacCCGUUGUGuCGCGUGUu -3' miRNA: 3'- gucaCGCGUGc--GGCAACGC-GUGUACG- -5' |
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11292 | 3' | -55.9 | NC_003083.1 | + | 54502 | 0.7 | 0.614868 |
Target: 5'- gGGUGCGCugGCCGUguuuagccuaGUGUACGa-- -3' miRNA: 3'- gUCACGCGugCGGCAa---------CGCGUGUacg -5' |
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11292 | 3' | -55.9 | NC_003083.1 | + | 59219 | 0.66 | 0.848885 |
Target: 5'- aAGUaUGCccaGCGCCGUUaaacGCGCAUggGUGCg -3' miRNA: 3'- gUCAcGCG---UGCGGCAA----CGCGUG--UACG- -5' |
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11292 | 3' | -55.9 | NC_003083.1 | + | 62804 | 0.72 | 0.499258 |
Target: 5'- -cGUGCGCACGCgCGUgGCgGCugacagcgugacuaGCGUGCg -3' miRNA: 3'- guCACGCGUGCG-GCAaCG-CG--------------UGUACG- -5' |
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11292 | 3' | -55.9 | NC_003083.1 | + | 62965 | 0.66 | 0.864725 |
Target: 5'- --uUGCGCACGCUaGUcacgcUGUcagccgccacGCGCGUGCg -3' miRNA: 3'- gucACGCGUGCGG-CA-----ACG----------CGUGUACG- -5' |
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11292 | 3' | -55.9 | NC_003083.1 | + | 66988 | 0.67 | 0.777934 |
Target: 5'- gCAGUGCGagGCGCCGUuuuaaUGUuuaACAUGUa -3' miRNA: 3'- -GUCACGCg-UGCGGCA-----ACGcg-UGUACG- -5' |
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11292 | 3' | -55.9 | NC_003083.1 | + | 70653 | 0.66 | 0.835617 |
Target: 5'- uCGGUGCGCGCGggugUGCucaagucguaaauuuGUACGUGCg -3' miRNA: 3'- -GUCACGCGUGCggcaACG---------------CGUGUACG- -5' |
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11292 | 3' | -55.9 | NC_003083.1 | + | 78057 | 0.66 | 0.835617 |
Target: 5'- uGGUG-GCAgCGCCuugcggucauuacacGUUGUGCACAgucUGCa -3' miRNA: 3'- gUCACgCGU-GCGG---------------CAACGCGUGU---ACG- -5' |
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11292 | 3' | -55.9 | NC_003083.1 | + | 83321 | 0.67 | 0.787378 |
Target: 5'- aAGUGUGuUACG-UGUUGCGCAacagUAUGCa -3' miRNA: 3'- gUCACGC-GUGCgGCAACGCGU----GUACG- -5' |
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11292 | 3' | -55.9 | NC_003083.1 | + | 87756 | 0.66 | 0.87232 |
Target: 5'- ---aGCGCuACGCCGUcaUGCuGUACccGCu -3' miRNA: 3'- gucaCGCG-UGCGGCA--ACG-CGUGuaCG- -5' |
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11292 | 3' | -55.9 | NC_003083.1 | + | 100620 | 0.67 | 0.787378 |
Target: 5'- -uGUGCGCaACGgCG-UGCGCACugaacGCu -3' miRNA: 3'- guCACGCG-UGCgGCaACGCGUGua---CG- -5' |
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11292 | 3' | -55.9 | NC_003083.1 | + | 100719 | 0.67 | 0.777934 |
Target: 5'- gCAGgugGCGCcgccCGCUGaUGCGCuagauuCGUGCg -3' miRNA: 3'- -GUCa--CGCGu---GCGGCaACGCGu-----GUACG- -5' |
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11292 | 3' | -55.9 | NC_003083.1 | + | 100760 | 1.12 | 0.001327 |
Target: 5'- uCAGUGCGCACGCCGUUGCGCACAUGCg -3' miRNA: 3'- -GUCACGCGUGCGGCAACGCGUGUACG- -5' |
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11292 | 3' | -55.9 | NC_003083.1 | + | 113668 | 0.71 | 0.593979 |
Target: 5'- ---cGCGCGCGuuGUggaaGCGCGCAauuuUGCc -3' miRNA: 3'- gucaCGCGUGCggCAa---CGCGUGU----ACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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