miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11292 3' -55.9 NC_003083.1 + 78057 0.66 0.835617
Target:  5'- uGGUG-GCAgCGCCuugcggucauuacacGUUGUGCACAgucUGCa -3'
miRNA:   3'- gUCACgCGU-GCGG---------------CAACGCGUGU---ACG- -5'
11292 3' -55.9 NC_003083.1 + 70653 0.66 0.835617
Target:  5'- uCGGUGCGCGCGggugUGCucaagucguaaauuuGUACGUGCg -3'
miRNA:   3'- -GUCACGCGUGCggcaACG---------------CGUGUACG- -5'
11292 3' -55.9 NC_003083.1 + 59219 0.66 0.848885
Target:  5'- aAGUaUGCccaGCGCCGUUaaacGCGCAUggGUGCg -3'
miRNA:   3'- gUCAcGCG---UGCGGCAA----CGCGUG--UACG- -5'
11292 3' -55.9 NC_003083.1 + 37867 0.66 0.848885
Target:  5'- aAGUcaGCGUcCGCCGUggacaacgugUGCGC-CAUGUu -3'
miRNA:   3'- gUCA--CGCGuGCGGCA----------ACGCGuGUACG- -5'
11292 3' -55.9 NC_003083.1 + 4495 0.67 0.796676
Target:  5'- -uGUGaCaCGCGUCGUUGaCGCACA-GCg -3'
miRNA:   3'- guCAC-GcGUGCGGCAAC-GCGUGUaCG- -5'
11292 3' -55.9 NC_003083.1 + 51416 0.67 0.787378
Target:  5'- ---cGCGCGCGCuCGUuuaaUGUGCGCGUc- -3'
miRNA:   3'- gucaCGCGUGCG-GCA----ACGCGUGUAcg -5'
11292 3' -55.9 NC_003083.1 + 83321 0.67 0.787378
Target:  5'- aAGUGUGuUACG-UGUUGCGCAacagUAUGCa -3'
miRNA:   3'- gUCACGC-GUGCgGCAACGCGU----GUACG- -5'
11292 3' -55.9 NC_003083.1 + 42544 0.68 0.758644
Target:  5'- uCGGUGuCGCAC-UCGUuuaUGCGCACGucagaaacuUGCg -3'
miRNA:   3'- -GUCAC-GCGUGcGGCA---ACGCGUGU---------ACG- -5'
11292 3' -55.9 NC_003083.1 + 16608 0.68 0.738886
Target:  5'- ---cGCGCACuGCCGUUucguaaauuuuaGCGUcCGUGCa -3'
miRNA:   3'- gucaCGCGUG-CGGCAA------------CGCGuGUACG- -5'
11292 3' -55.9 NC_003083.1 + 20092 0.69 0.702392
Target:  5'- aGGUGUGUuacgACGCCGaaaaaauuguaugcuUUGUGC-CAUGCg -3'
miRNA:   3'- gUCACGCG----UGCGGC---------------AACGCGuGUACG- -5'
11292 3' -55.9 NC_003083.1 + 54502 0.7 0.614868
Target:  5'- gGGUGCGCugGCCGUguuuagccuaGUGUACGa-- -3'
miRNA:   3'- gUCACGCGugCGGCAa---------CGCGUGUacg -5'
11292 3' -55.9 NC_003083.1 + 27061 0.71 0.552611
Target:  5'- gCAGcUGCGUugGCgguguccaaGUUGCGCACG-GCa -3'
miRNA:   3'- -GUC-ACGCGugCGg--------CAACGCGUGUaCG- -5'
11292 3' -55.9 NC_003083.1 + 100760 1.12 0.001327
Target:  5'- uCAGUGCGCACGCCGUUGCGCACAUGCg -3'
miRNA:   3'- -GUCACGCGUGCGGCAACGCGUGUACG- -5'
11292 3' -55.9 NC_003083.1 + 62965 0.66 0.864725
Target:  5'- --uUGCGCACGCUaGUcacgcUGUcagccgccacGCGCGUGCg -3'
miRNA:   3'- gucACGCGUGCGG-CA-----ACG----------CGUGUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.