Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11293 | 5' | -51.7 | NC_003083.1 | + | 19744 | 0.69 | 0.913927 |
Target: 5'- aGCGCguaUUGGCucauuuugcGCAACGUCCuGCGCAu -3' miRNA: 3'- -CGUGaa-GGCCG---------UGUUGUAGGuUGCGU- -5' |
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11293 | 5' | -51.7 | NC_003083.1 | + | 19384 | 0.67 | 0.958844 |
Target: 5'- uGCACaagaugucgagUUCCGGUaACAugGUCCAAuUGCu -3' miRNA: 3'- -CGUG-----------AAGGCCG-UGUugUAGGUU-GCGu -5' |
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11293 | 5' | -51.7 | NC_003083.1 | + | 18326 | 0.7 | 0.839757 |
Target: 5'- -gGCUUCCGcGUugACAACAgcgCCGGCGUAc -3' miRNA: 3'- cgUGAAGGC-CG--UGUUGUa--GGUUGCGU- -5' |
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11293 | 5' | -51.7 | NC_003083.1 | + | 16738 | 0.66 | 0.97767 |
Target: 5'- aGCGa-UCCGuGCACAACG-CCcACGUAa -3' miRNA: 3'- -CGUgaAGGC-CGUGUUGUaGGuUGCGU- -5' |
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11293 | 5' | -51.7 | NC_003083.1 | + | 15435 | 0.68 | 0.925739 |
Target: 5'- cCACUUgCGGC-CGACAaCUAACGUg -3' miRNA: 3'- cGUGAAgGCCGuGUUGUaGGUUGCGu -5' |
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11293 | 5' | -51.7 | NC_003083.1 | + | 9729 | 0.66 | 0.969276 |
Target: 5'- gGCAUUUUacguuuaGGCAaaauuCAGCGUCCucGCGCAu -3' miRNA: 3'- -CGUGAAGg------CCGU-----GUUGUAGGu-UGCGU- -5' |
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11293 | 5' | -51.7 | NC_003083.1 | + | 8871 | 0.68 | 0.93125 |
Target: 5'- aGCcUUUCaaaGGCGCAACAUCau-CGCGg -3' miRNA: 3'- -CGuGAAGg--CCGUGUUGUAGguuGCGU- -5' |
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11293 | 5' | -51.7 | NC_003083.1 | + | 5860 | 0.69 | 0.913927 |
Target: 5'- gGCGCgUCCGGUACG-CGUUCAA-GCGu -3' miRNA: 3'- -CGUGaAGGCCGUGUuGUAGGUUgCGU- -5' |
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11293 | 5' | -51.7 | NC_003083.1 | + | 3862 | 0.67 | 0.962559 |
Target: 5'- aCACgUUCCGGUauuACGACAacgCCAacauGCGCGa -3' miRNA: 3'- cGUG-AAGGCCG---UGUUGUa--GGU----UGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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