Results 21 - 29 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 11293 | 5' | -51.7 | NC_003083.1 | + | 114211 | 0.69 | 0.901068 |
|
Target: 5'- gGCGCUggUUCGGCugGugaAUAUCCAGgGCu -3' miRNA: 3'- -CGUGA--AGGCCGugU---UGUAGGUUgCGu -5' |
|||||||
| 11293 | 5' | -51.7 | NC_003083.1 | + | 100901 | 0.69 | 0.890041 |
|
Target: 5'- cGCACUUCUGaauuguuguaaaacaGCACGcACGaaUCUAGCGCAu -3' miRNA: 3'- -CGUGAAGGC---------------CGUGU-UGU--AGGUUGCGU- -5' |
|||||||
| 11293 | 5' | -51.7 | NC_003083.1 | + | 91496 | 0.7 | 0.879866 |
|
Target: 5'- gGCGCUaaUCCGGC-CAuugGCgAUCCGaaACGCGa -3' miRNA: 3'- -CGUGA--AGGCCGuGU---UG-UAGGU--UGCGU- -5' |
|||||||
| 11293 | 5' | -51.7 | NC_003083.1 | + | 106226 | 0.7 | 0.856479 |
|
Target: 5'- --uUUUCCGcGCACAACAagCAAUGCGa -3' miRNA: 3'- cguGAAGGC-CGUGUUGUagGUUGCGU- -5' |
|||||||
| 11293 | 5' | -51.7 | NC_003083.1 | + | 18326 | 0.7 | 0.839757 |
|
Target: 5'- -gGCUUCCGcGUugACAACAgcgCCGGCGUAc -3' miRNA: 3'- cgUGAAGGC-CG--UGUUGUa--GGUUGCGU- -5' |
|||||||
| 11293 | 5' | -51.7 | NC_003083.1 | + | 98826 | 0.72 | 0.77515 |
|
Target: 5'- -aACUcaUCCGGCACGu--UCCAugGCGu -3' miRNA: 3'- cgUGA--AGGCCGUGUuguAGGUugCGU- -5' |
|||||||
| 11293 | 5' | -51.7 | NC_003083.1 | + | 32181 | 0.72 | 0.77515 |
|
Target: 5'- cGCACacugCCGGCGCuAUAUuggUCAACGCAa -3' miRNA: 3'- -CGUGaa--GGCCGUGuUGUA---GGUUGCGU- -5' |
|||||||
| 11293 | 5' | -51.7 | NC_003083.1 | + | 44080 | 0.77 | 0.492336 |
|
Target: 5'- aCGCUUUgCGGCGCAGCGUCUAACGa- -3' miRNA: 3'- cGUGAAG-GCCGUGUUGUAGGUUGCgu -5' |
|||||||
| 11293 | 5' | -51.7 | NC_003083.1 | + | 105201 | 1.11 | 0.00395 |
|
Target: 5'- aGCACUUCCGGCACAACAUCCAACGCAc -3' miRNA: 3'- -CGUGAAGGCCGUGUUGUAGGUUGCGU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home