miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11302 3' -46.8 NC_003083.1 + 58828 0.66 0.999765
Target:  5'- cGcgCGCGuauCGCACgGGUUgaucGGCACGc -3'
miRNA:   3'- -CuaGCGCu--GUGUGgUUAAau--UCGUGC- -5'
11302 3' -46.8 NC_003083.1 + 71941 0.66 0.999765
Target:  5'- cAUCGCGGCcaacccGCGCUAuuGUUUGcaaguguuuAGCGCGg -3'
miRNA:   3'- cUAGCGCUG------UGUGGU--UAAAU---------UCGUGC- -5'
11302 3' -46.8 NC_003083.1 + 68133 0.66 0.999759
Target:  5'- uGAUCGCGACACuuuuaugAUCAAUUU--GCAa- -3'
miRNA:   3'- -CUAGCGCUGUG-------UGGUUAAAuuCGUgc -5'
11302 3' -46.8 NC_003083.1 + 46304 0.66 0.999699
Target:  5'- --gCGCGG-ACGCCAAc--AAGCGCGa -3'
miRNA:   3'- cuaGCGCUgUGUGGUUaaaUUCGUGC- -5'
11302 3' -46.8 NC_003083.1 + 66694 0.66 0.999616
Target:  5'- -uUCGCGGUACACUAGcgu--GCACGa -3'
miRNA:   3'- cuAGCGCUGUGUGGUUaaauuCGUGC- -5'
11302 3' -46.8 NC_003083.1 + 87324 0.66 0.999616
Target:  5'- uGUCgGCGACGCGuCCGugu--GGCGCGc -3'
miRNA:   3'- cUAG-CGCUGUGU-GGUuaaauUCGUGC- -5'
11302 3' -46.8 NC_003083.1 + 47440 0.66 0.999391
Target:  5'- aGGUCGCGAuucCACACaCAAUaUUAacuacaAGUACGa -3'
miRNA:   3'- -CUAGCGCU---GUGUG-GUUA-AAU------UCGUGC- -5'
11302 3' -46.8 NC_003083.1 + 2073 0.67 0.999241
Target:  5'- -cUUGCGACGCcCCcAUUUucGGCACa -3'
miRNA:   3'- cuAGCGCUGUGuGGuUAAAu-UCGUGc -5'
11302 3' -46.8 NC_003083.1 + 9471 0.67 0.999241
Target:  5'- cGGUCGCG-CGCGCaaucGUUUcGGCGCu -3'
miRNA:   3'- -CUAGCGCuGUGUGgu--UAAAuUCGUGc -5'
11302 3' -46.8 NC_003083.1 + 87598 0.67 0.999136
Target:  5'- uGAUCGCGAUGCACCcaAugcguguuuacaaccGUUUAAcguGCACa -3'
miRNA:   3'- -CUAGCGCUGUGUGG--U---------------UAAAUU---CGUGc -5'
11302 3' -46.8 NC_003083.1 + 62611 0.67 0.99906
Target:  5'- --gCGaCGACACGCCGGgggccacGAGCGCc -3'
miRNA:   3'- cuaGC-GCUGUGUGGUUaaa----UUCGUGc -5'
11302 3' -46.8 NC_003083.1 + 51843 0.67 0.998843
Target:  5'- cGUCGCGACcaGCCAAUUccGAGCGu- -3'
miRNA:   3'- cUAGCGCUGugUGGUUAAa-UUCGUgc -5'
11302 3' -46.8 NC_003083.1 + 92222 0.67 0.99877
Target:  5'- cGAUCGgcccaaucaauuacUGGCACGCCGGgc--AGCGCGu -3'
miRNA:   3'- -CUAGC--------------GCUGUGUGGUUaaauUCGUGC- -5'
11302 3' -46.8 NC_003083.1 + 112346 0.67 0.998584
Target:  5'- --gCGCGAUcgACACCGucggugGAGCGCa -3'
miRNA:   3'- cuaGCGCUG--UGUGGUuaaa--UUCGUGc -5'
11302 3' -46.8 NC_003083.1 + 43276 0.67 0.998498
Target:  5'- cAUCGCGACGCcauugcuuuuugugGCCAugAUUgugcGCACGg -3'
miRNA:   3'- cUAGCGCUGUG--------------UGGU--UAAauu-CGUGC- -5'
11302 3' -46.8 NC_003083.1 + 35174 0.69 0.994112
Target:  5'- uGAUgCGCGuCACcucguuGCCAAUgcgguacUUGAGCACGg -3'
miRNA:   3'- -CUA-GCGCuGUG------UGGUUA-------AAUUCGUGC- -5'
11302 3' -46.8 NC_003083.1 + 58143 0.69 0.992157
Target:  5'- cGUCGUG-CGCACCucucaUUAAGCGCu -3'
miRNA:   3'- cUAGCGCuGUGUGGuua--AAUUCGUGc -5'
11302 3' -46.8 NC_003083.1 + 63915 0.69 0.992157
Target:  5'- uGUUGcCGACACACCG--UUGAuGCACa -3'
miRNA:   3'- cUAGC-GCUGUGUGGUuaAAUU-CGUGc -5'
11302 3' -46.8 NC_003083.1 + 65026 0.69 0.992041
Target:  5'- uGGUCGCGACACAU-------GGCGCa -3'
miRNA:   3'- -CUAGCGCUGUGUGguuaaauUCGUGc -5'
11302 3' -46.8 NC_003083.1 + 12755 0.7 0.988057
Target:  5'- --aUuaGAUuugACACCAAUUUAGGCACGu -3'
miRNA:   3'- cuaGcgCUG---UGUGGUUAAAUUCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.