miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11307 5' -48.9 NC_003083.1 + 11677 0.66 0.99716
Target:  5'- cGCAACAaacucguAUUGgcuuGCGCGgaacacuauacaccgGGCGUGGCa -3'
miRNA:   3'- -CGUUGU-------UAAC----UGCGCaaa------------CCGCGCUG- -5'
11307 5' -48.9 NC_003083.1 + 17802 0.66 0.99706
Target:  5'- gGCAAUAAUUGcagagguCGuCGUUUgcccGGCGCGGu -3'
miRNA:   3'- -CGUUGUUAACu------GC-GCAAA----CCGCGCUg -5'
11307 5' -48.9 NC_003083.1 + 49997 0.66 0.996512
Target:  5'- ---uCAAUUGAguaCGUGUUUGGC-CGAUa -3'
miRNA:   3'- cguuGUUAACU---GCGCAAACCGcGCUG- -5'
11307 5' -48.9 NC_003083.1 + 58694 0.66 0.995883
Target:  5'- cGCAACAcgUuGCGCcacuguugaUUUGGCGgGGCu -3'
miRNA:   3'- -CGUUGUuaAcUGCGc--------AAACCGCgCUG- -5'
11307 5' -48.9 NC_003083.1 + 107023 0.66 0.995815
Target:  5'- -aAGCGAUgcggGugGCGaUUauuguccaaccuaGGCGCGGCg -3'
miRNA:   3'- cgUUGUUAa---CugCGCaAA-------------CCGCGCUG- -5'
11307 5' -48.9 NC_003083.1 + 88246 0.66 0.995462
Target:  5'- cGCAGCGGgcgcggUGcCGCGaggguaacgaccGGCGCGGCu -3'
miRNA:   3'- -CGUUGUUa-----ACuGCGCaaa---------CCGCGCUG- -5'
11307 5' -48.9 NC_003083.1 + 14410 0.66 0.995163
Target:  5'- aGCAcaAGUUGugGCa-UUGGCGCGu- -3'
miRNA:   3'- -CGUugUUAACugCGcaAACCGCGCug -5'
11307 5' -48.9 NC_003083.1 + 947 0.66 0.995163
Target:  5'- aGCAACGGUUGggGCGCGUa-GGaCGCa-- -3'
miRNA:   3'- -CGUUGUUAAC--UGCGCAaaCC-GCGcug -5'
11307 5' -48.9 NC_003083.1 + 49843 0.67 0.994345
Target:  5'- uGCAcuuCGucgGACGCGUUacGCGCGAg -3'
miRNA:   3'- -CGUu--GUuaaCUGCGCAAacCGCGCUg -5'
11307 5' -48.9 NC_003083.1 + 67937 0.67 0.993419
Target:  5'- gGCAACAAcgcUGucuuCGUUaGGCGCGACc -3'
miRNA:   3'- -CGUUGUUa--ACugc-GCAAaCCGCGCUG- -5'
11307 5' -48.9 NC_003083.1 + 74379 0.67 0.992375
Target:  5'- cGCAAcCGAUcucccGCGCGUUUGGCgGCcGCg -3'
miRNA:   3'- -CGUU-GUUAac---UGCGCAAACCG-CGcUG- -5'
11307 5' -48.9 NC_003083.1 + 93285 0.67 0.992264
Target:  5'- aGCAACAcugcaugGUUGAgGcCGUUguUGGCGCa-- -3'
miRNA:   3'- -CGUUGU-------UAACUgC-GCAA--ACCGCGcug -5'
11307 5' -48.9 NC_003083.1 + 31234 0.67 0.991204
Target:  5'- cCGACAAUcUGAuugccgguuUGCGUUUGGUguGCGAUa -3'
miRNA:   3'- cGUUGUUA-ACU---------GCGCAAACCG--CGCUG- -5'
11307 5' -48.9 NC_003083.1 + 71795 0.68 0.988438
Target:  5'- uGCAaACAAUa-GCGCGggUUGGCcGCGAUg -3'
miRNA:   3'- -CGU-UGUUAacUGCGCa-AACCG-CGCUG- -5'
11307 5' -48.9 NC_003083.1 + 1624 0.68 0.985041
Target:  5'- cGC-ACAuuAUUGGCGCcg-UGGCGCG-Cu -3'
miRNA:   3'- -CGuUGU--UAACUGCGcaaACCGCGCuG- -5'
11307 5' -48.9 NC_003083.1 + 51630 0.68 0.985041
Target:  5'- cCGAUggUgccgugGACGCGgcUGGuCGCGAa -3'
miRNA:   3'- cGUUGuuAa-----CUGCGCaaACC-GCGCUg -5'
11307 5' -48.9 NC_003083.1 + 94821 0.68 0.980932
Target:  5'- aGCAAUGAUUGuuuACGCGaUUUuuccGGuCGCGGCg -3'
miRNA:   3'- -CGUUGUUAAC---UGCGC-AAA----CC-GCGCUG- -5'
11307 5' -48.9 NC_003083.1 + 13220 0.69 0.978585
Target:  5'- cGCGACGAuUUGAaaUGCGUUgcaacGCGCGAg -3'
miRNA:   3'- -CGUUGUU-AACU--GCGCAAac---CGCGCUg -5'
11307 5' -48.9 NC_003083.1 + 39462 0.69 0.976032
Target:  5'- uCAACAAcUGAgauUGUGccgGGCGCGACg -3'
miRNA:   3'- cGUUGUUaACU---GCGCaaaCCGCGCUG- -5'
11307 5' -48.9 NC_003083.1 + 23982 0.69 0.970268
Target:  5'- uGCAACGcacGGCGUGUUgGGCgGCGAg -3'
miRNA:   3'- -CGUUGUuaaCUGCGCAAaCCG-CGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.