Results 41 - 53 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11314 | 5' | -50.9 | NC_003084.1 | + | 59194 | 0.71 | 0.857334 |
Target: 5'- gGCCAcaGCUGGg---GCCCGGgUUGGGCu -3' miRNA: 3'- -CGGU--UGACUacuaCGGGUUgAGCUCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 9320 | 0.71 | 0.854866 |
Target: 5'- cGCCAcuacaaccaucaaaGCUGGUagaccGGUgcGCCCAGCUCG-GCa -3' miRNA: 3'- -CGGU--------------UGACUA-----CUA--CGGGUUGAGCuCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 75300 | 0.71 | 0.840502 |
Target: 5'- gGCCAAC--GUGG-GCuUCAGCUCGAGCc -3' miRNA: 3'- -CGGUUGacUACUaCG-GGUUGAGCUCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 65015 | 0.71 | 0.82282 |
Target: 5'- cGCCGACaGAaaguUGAgcgucaaaucGCCCAgaaACUCGGGCg -3' miRNA: 3'- -CGGUUGaCU----ACUa---------CGGGU---UGAGCUCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 19223 | 0.72 | 0.775378 |
Target: 5'- aGCCAAC-GGUuucGGUGUCCAAUaCGGGCa -3' miRNA: 3'- -CGGUUGaCUA---CUACGGGUUGaGCUCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 45920 | 0.73 | 0.745104 |
Target: 5'- cGCCGACgagGAUGAUGUCgAuggUGAGCa -3' miRNA: 3'- -CGGUUGa--CUACUACGGgUugaGCUCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 74195 | 0.74 | 0.703234 |
Target: 5'- uGUCGguuucACUGGUGAccaagcGCgCCAACUCGGGCg -3' miRNA: 3'- -CGGU-----UGACUACUa-----CG-GGUUGAGCUCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 47566 | 0.74 | 0.681851 |
Target: 5'- aGCCAACUGcaauAUGGUGCUCAcgaaggaggaGCUgaaCGAGCu -3' miRNA: 3'- -CGGUUGAC----UACUACGGGU----------UGA---GCUCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 1236 | 0.74 | 0.681851 |
Target: 5'- gGCCGACUGGUGAUGCUaaaugaGGgUgGAGUu -3' miRNA: 3'- -CGGUUGACUACUACGGg-----UUgAgCUCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 22956 | 0.75 | 0.648373 |
Target: 5'- cGCCAGCUGAuuguuguUGA-GCgCCAACaUCGGGUa -3' miRNA: 3'- -CGGUUGACU-------ACUaCG-GGUUG-AGCUCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 105765 | 0.75 | 0.616922 |
Target: 5'- gGCCGACUGGUGAUGCUaaaugaGGgUgGAGUg -3' miRNA: 3'- -CGGUUGACUACUACGGg-----UUgAgCUCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 2198 | 0.77 | 0.520902 |
Target: 5'- gGCCAACUGGUGAUaCUCAACUaGGGUu -3' miRNA: 3'- -CGGUUGACUACUAcGGGUUGAgCUCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 7608 | 1.15 | 0.002338 |
Target: 5'- uGCCAACUGAUGAUGCCCAACUCGAGCa -3' miRNA: 3'- -CGGUUGACUACUACGGGUUGAGCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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