miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11314 5' -50.9 NC_003084.1 + 58909 0.67 0.959833
Target:  5'- gGUCAACgugGAUGAaaUGCCaCAACguUCGcGCa -3'
miRNA:   3'- -CGGUUGa--CUACU--ACGG-GUUG--AGCuCG- -5'
11314 5' -50.9 NC_003084.1 + 78206 0.67 0.959833
Target:  5'- aCCGAUg---GAUGaCCGACUUGGGCa -3'
miRNA:   3'- cGGUUGacuaCUACgGGUUGAGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 66660 0.67 0.959833
Target:  5'- cGCuCGGCUGGgcuUGAUuCCUgguAGCUCGAGUg -3'
miRNA:   3'- -CG-GUUGACU---ACUAcGGG---UUGAGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 9791 0.67 0.9559
Target:  5'- cGCCAACcGAguccgGUCCGucuucCUCGAGCu -3'
miRNA:   3'- -CGGUUGaCUacua-CGGGUu----GAGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 16943 0.67 0.9559
Target:  5'- uCCAcCUccGAUGA-GCCCGAggCGAGCg -3'
miRNA:   3'- cGGUuGA--CUACUaCGGGUUgaGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 23592 0.67 0.9559
Target:  5'- aCCAcuuggcGCUGAUGAUcaUCAGCgUCGAGCu -3'
miRNA:   3'- cGGU------UGACUACUAcgGGUUG-AGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 91102 0.68 0.951713
Target:  5'- gGCCAcACgu-UGGUGUCCGuGCUUGGGCc -3'
miRNA:   3'- -CGGU-UGacuACUACGGGU-UGAGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 99940 0.68 0.947268
Target:  5'- -aCGACUGGUG--GCCgAcCUCGGGCu -3'
miRNA:   3'- cgGUUGACUACuaCGGgUuGAGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 25327 0.68 0.932349
Target:  5'- gGCCcuACcGAcGAUGCCCGACacgguggCGGGCc -3'
miRNA:   3'- -CGGu-UGaCUaCUACGGGUUGa------GCUCG- -5'
11314 5' -50.9 NC_003084.1 + 14654 0.69 0.926841
Target:  5'- gGCCGcGCUGA-GAUGUUCAGCuucauagucgUCGGGCc -3'
miRNA:   3'- -CGGU-UGACUaCUACGGGUUG----------AGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 50585 0.69 0.91928
Target:  5'- uGUCAACUc-UGAUaugccgcuaccccaGCCCaAACUCGAGCu -3'
miRNA:   3'- -CGGUUGAcuACUA--------------CGGG-UUGAGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 30405 0.69 0.915021
Target:  5'- gGCCGGaUGc-GGUGCaccuCCAACUCGGGCa -3'
miRNA:   3'- -CGGUUgACuaCUACG----GGUUGAGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 68773 0.69 0.908709
Target:  5'- gGCUAGa-GGUGGUaugcGCCCGACUUGGGUu -3'
miRNA:   3'- -CGGUUgaCUACUA----CGGGUUGAGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 95434 0.7 0.895295
Target:  5'- uUCAACg---GA-GCCCAACUCGAGg -3'
miRNA:   3'- cGGUUGacuaCUaCGGGUUGAGCUCg -5'
11314 5' -50.9 NC_003084.1 + 97545 0.7 0.893193
Target:  5'- aCCAcCUGgcGGUGCCCcucaaagucagccaAACUCGuGCa -3'
miRNA:   3'- cGGUuGACuaCUACGGG--------------UUGAGCuCG- -5'
11314 5' -50.9 NC_003084.1 + 105651 0.7 0.888199
Target:  5'- aGUCGGCcGA-GGUGUCCAgguaGCUUGGGCa -3'
miRNA:   3'- -CGGUUGaCUaCUACGGGU----UGAGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 21288 0.7 0.880849
Target:  5'- cGCuCGACUcg-GA-GCCCGACUgGGGCa -3'
miRNA:   3'- -CG-GUUGAcuaCUaCGGGUUGAgCUCG- -5'
11314 5' -50.9 NC_003084.1 + 102409 0.7 0.873251
Target:  5'- uGCCuguuuGCaGGUGGgcuuguUGCCCGACUCcAGCa -3'
miRNA:   3'- -CGGu----UGaCUACU------ACGGGUUGAGcUCG- -5'
11314 5' -50.9 NC_003084.1 + 64525 0.7 0.865411
Target:  5'- cCUAAC-GGUGGaccUGCCCAGCUCGAu- -3'
miRNA:   3'- cGGUUGaCUACU---ACGGGUUGAGCUcg -5'
11314 5' -50.9 NC_003084.1 + 97369 0.7 0.865411
Target:  5'- aCCAACUGGUGAaacuguugaGCCCGGCcugcaCGAGUu -3'
miRNA:   3'- cGGUUGACUACUa--------CGGGUUGa----GCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.