miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11314 5' -50.9 NC_003084.1 + 44203 0.67 0.971382
Target:  5'- aUCGACUGcacaAUGUCCAcggguuccgugcaacACUCGAGCg -3'
miRNA:   3'- cGGUUGACuac-UACGGGU---------------UGAGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 45920 0.73 0.745104
Target:  5'- cGCCGACgagGAUGAUGUCgAuggUGAGCa -3'
miRNA:   3'- -CGGUUGa--CUACUACGGgUugaGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 47566 0.74 0.681851
Target:  5'- aGCCAACUGcaauAUGGUGCUCAcgaaggaggaGCUgaaCGAGCu -3'
miRNA:   3'- -CGGUUGAC----UACUACGGGU----------UGA---GCUCG- -5'
11314 5' -50.9 NC_003084.1 + 49371 0.67 0.963517
Target:  5'- gGCCGuagUUGGUGGUGCUagCAuuuaaggccACUUGAGCg -3'
miRNA:   3'- -CGGUu--GACUACUACGG--GU---------UGAGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 49916 0.66 0.984882
Target:  5'- aCCAccACUGGUGua--CCAACUUGGGUu -3'
miRNA:   3'- cGGU--UGACUACuacgGGUUGAGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 50585 0.69 0.91928
Target:  5'- uGUCAACUc-UGAUaugccgcuaccccaGCCCaAACUCGAGCu -3'
miRNA:   3'- -CGGUUGAcuACUA--------------CGGG-UUGAGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 55485 0.67 0.963517
Target:  5'- uCCAACUGgcGGUGCaaauuuugCAGCUcCGAGUc -3'
miRNA:   3'- cGGUUGACuaCUACGg-------GUUGA-GCUCG- -5'
11314 5' -50.9 NC_003084.1 + 58716 0.66 0.97844
Target:  5'- gGUCAACgGAaGGUGCCCAAgUUuaaGGGUa -3'
miRNA:   3'- -CGGUUGaCUaCUACGGGUUgAG---CUCG- -5'
11314 5' -50.9 NC_003084.1 + 58909 0.67 0.959833
Target:  5'- gGUCAACgugGAUGAaaUGCCaCAACguUCGcGCa -3'
miRNA:   3'- -CGGUUGa--CUACU--ACGG-GUUG--AGCuCG- -5'
11314 5' -50.9 NC_003084.1 + 59038 0.66 0.980779
Target:  5'- uCCGGCgaaGGUGAagguaucgaGCCCAACcCGGGCc -3'
miRNA:   3'- cGGUUGa--CUACUa--------CGGGUUGaGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 59194 0.71 0.857334
Target:  5'- gGCCAcaGCUGGg---GCCCGGgUUGGGCu -3'
miRNA:   3'- -CGGU--UGACUacuaCGGGUUgAGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 64525 0.7 0.865411
Target:  5'- cCUAAC-GGUGGaccUGCCCAGCUCGAu- -3'
miRNA:   3'- cGGUUGaCUACU---ACGGGUUGAGCUcg -5'
11314 5' -50.9 NC_003084.1 + 65015 0.71 0.82282
Target:  5'- cGCCGACaGAaaguUGAgcgucaaaucGCCCAgaaACUCGGGCg -3'
miRNA:   3'- -CGGUUGaCU----ACUa---------CGGGU---UGAGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 66660 0.67 0.959833
Target:  5'- cGCuCGGCUGGgcuUGAUuCCUgguAGCUCGAGUg -3'
miRNA:   3'- -CG-GUUGACU---ACUAcGGG---UUGAGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 68773 0.69 0.908709
Target:  5'- gGCUAGa-GGUGGUaugcGCCCGACUUGGGUu -3'
miRNA:   3'- -CGGUUgaCUACUA----CGGGUUGAGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 70426 0.67 0.963517
Target:  5'- gGCUgAACUGGUGcgaGUCCcgUUCGAGCu -3'
miRNA:   3'- -CGG-UUGACUACua-CGGGuuGAGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 71832 0.66 0.97844
Target:  5'- cGCCcgaauucaAugUGAUGAaGCCCGAC-CGAuGUc -3'
miRNA:   3'- -CGG--------UugACUACUaCGGGUUGaGCU-CG- -5'
11314 5' -50.9 NC_003084.1 + 73788 0.66 0.982923
Target:  5'- cGCgAGCUGGUGGa--CCAG-UCGGGCg -3'
miRNA:   3'- -CGgUUGACUACUacgGGUUgAGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 74195 0.74 0.703234
Target:  5'- uGUCGguuucACUGGUGAccaagcGCgCCAACUCGGGCg -3'
miRNA:   3'- -CGGU-----UGACUACUa-----CG-GGUUGAGCUCG- -5'
11314 5' -50.9 NC_003084.1 + 74447 0.66 0.973141
Target:  5'- cGCCAgcgcuacagugaACUGGUGAUGCCgcugggaAACaUUGAGg -3'
miRNA:   3'- -CGGU------------UGACUACUACGGg------UUG-AGCUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.