Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11314 | 5' | -50.9 | NC_003084.1 | + | 68773 | 0.69 | 0.908709 |
Target: 5'- gGCUAGa-GGUGGUaugcGCCCGACUUGGGUu -3' miRNA: 3'- -CGGUUgaCUACUA----CGGGUUGAGCUCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 30405 | 0.69 | 0.915021 |
Target: 5'- gGCCGGaUGc-GGUGCaccuCCAACUCGGGCa -3' miRNA: 3'- -CGGUUgACuaCUACG----GGUUGAGCUCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 50585 | 0.69 | 0.91928 |
Target: 5'- uGUCAACUc-UGAUaugccgcuaccccaGCCCaAACUCGAGCu -3' miRNA: 3'- -CGGUUGAcuACUA--------------CGGG-UUGAGCUCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 14654 | 0.69 | 0.926841 |
Target: 5'- gGCCGcGCUGA-GAUGUUCAGCuucauagucgUCGGGCc -3' miRNA: 3'- -CGGU-UGACUaCUACGGGUUG----------AGCUCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 25327 | 0.68 | 0.932349 |
Target: 5'- gGCCcuACcGAcGAUGCCCGACacgguggCGGGCc -3' miRNA: 3'- -CGGu-UGaCUaCUACGGGUUGa------GCUCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 99940 | 0.68 | 0.947268 |
Target: 5'- -aCGACUGGUG--GCCgAcCUCGGGCu -3' miRNA: 3'- cgGUUGACUACuaCGGgUuGAGCUCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 91102 | 0.68 | 0.951713 |
Target: 5'- gGCCAcACgu-UGGUGUCCGuGCUUGGGCc -3' miRNA: 3'- -CGGU-UGacuACUACGGGU-UGAGCUCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 9791 | 0.67 | 0.9559 |
Target: 5'- cGCCAACcGAguccgGUCCGucuucCUCGAGCu -3' miRNA: 3'- -CGGUUGaCUacua-CGGGUu----GAGCUCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 23592 | 0.67 | 0.9559 |
Target: 5'- aCCAcuuggcGCUGAUGAUcaUCAGCgUCGAGCu -3' miRNA: 3'- cGGU------UGACUACUAcgGGUUG-AGCUCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 16943 | 0.67 | 0.9559 |
Target: 5'- uCCAcCUccGAUGA-GCCCGAggCGAGCg -3' miRNA: 3'- cGGUuGA--CUACUaCGGGUUgaGCUCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 66660 | 0.67 | 0.959833 |
Target: 5'- cGCuCGGCUGGgcuUGAUuCCUgguAGCUCGAGUg -3' miRNA: 3'- -CG-GUUGACU---ACUAcGGG---UUGAGCUCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 78206 | 0.67 | 0.959833 |
Target: 5'- aCCGAUg---GAUGaCCGACUUGGGCa -3' miRNA: 3'- cGGUUGacuaCUACgGGUUGAGCUCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 58909 | 0.67 | 0.959833 |
Target: 5'- gGUCAACgugGAUGAaaUGCCaCAACguUCGcGCa -3' miRNA: 3'- -CGGUUGa--CUACU--ACGG-GUUG--AGCuCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 81309 | 0.67 | 0.963517 |
Target: 5'- cCCGGCggaGAUGAUugcgaagauaGCCuCAGCcCGAGCg -3' miRNA: 3'- cGGUUGa--CUACUA----------CGG-GUUGaGCUCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 49371 | 0.67 | 0.963517 |
Target: 5'- gGCCGuagUUGGUGGUGCUagCAuuuaaggccACUUGAGCg -3' miRNA: 3'- -CGGUu--GACUACUACGG--GU---------UGAGCUCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 55485 | 0.67 | 0.963517 |
Target: 5'- uCCAACUGgcGGUGCaaauuuugCAGCUcCGAGUc -3' miRNA: 3'- cGGUUGACuaCUACGg-------GUUGA-GCUCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 70426 | 0.67 | 0.963517 |
Target: 5'- gGCUgAACUGGUGcgaGUCCcgUUCGAGCu -3' miRNA: 3'- -CGG-UUGACUACua-CGGGuuGAGCUCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 4839 | 0.67 | 0.966959 |
Target: 5'- aCCAACcGuauUGGc-CCCAGCUUGAGCg -3' miRNA: 3'- cGGUUGaCu--ACUacGGGUUGAGCUCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 87101 | 0.67 | 0.970165 |
Target: 5'- cCCAACcGAUGGUGCUCGAUgaacagUUGcAGCu -3' miRNA: 3'- cGGUUGaCUACUACGGGUUG------AGC-UCG- -5' |
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11314 | 5' | -50.9 | NC_003084.1 | + | 44203 | 0.67 | 0.971382 |
Target: 5'- aUCGACUGcacaAUGUCCAcggguuccgugcaacACUCGAGCg -3' miRNA: 3'- cGGUUGACuac-UACGGGU---------------UGAGCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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